Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12993 | 5' | -56.3 | NC_003387.1 | + | 48596 | 1.09 | 0.00071 |
Target: 5'- aCCCAAAAGCCCGCCGCUAACCCACCUc -3' miRNA: 3'- -GGGUUUUCGGGCGGCGAUUGGGUGGA- -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 30519 | 0.79 | 0.101392 |
Target: 5'- gCCgCGAGAGCCCGCUugGgUGGCCCACCc -3' miRNA: 3'- -GG-GUUUUCGGGCGG--CgAUUGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 6420 | 0.78 | 0.126931 |
Target: 5'- uCCCAGcGGCCCGCUGCg---CCGCCUg -3' miRNA: 3'- -GGGUUuUCGGGCGGCGauugGGUGGA- -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 3779 | 0.78 | 0.126931 |
Target: 5'- gCCGAGcAGCCCGcCCGCcagcAACCCGCCg -3' miRNA: 3'- gGGUUU-UCGGGC-GGCGa---UUGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 4467 | 0.78 | 0.130514 |
Target: 5'- gCCGAccgccGAGCCCGCCGCgaaggccgAGCCCGCg- -3' miRNA: 3'- gGGUU-----UUCGGGCGGCGa-------UUGGGUGga -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 4232 | 0.76 | 0.181342 |
Target: 5'- aCCUgcAGGCCCGCCGCgacGGCCuCACUa -3' miRNA: 3'- -GGGuuUUCGGGCGGCGa--UUGG-GUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 35714 | 0.75 | 0.212845 |
Target: 5'- -aCGAcGGCCUGCCGCUGACCgAgCUg -3' miRNA: 3'- ggGUUuUCGGGCGGCGAUUGGgUgGA- -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 45759 | 0.74 | 0.218532 |
Target: 5'- gUCCGAGGGCgCGCUGUggcgccuGCCCGCCg -3' miRNA: 3'- -GGGUUUUCGgGCGGCGau-----UGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 30775 | 0.74 | 0.224349 |
Target: 5'- gCCgCAGAcgccuGCCCGCCGCc--CCCGCCg -3' miRNA: 3'- -GG-GUUUu----CGGGCGGCGauuGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 8065 | 0.74 | 0.224349 |
Target: 5'- gCUGGcGGCCCG-CGCUAACCCGCUg -3' miRNA: 3'- gGGUUuUCGGGCgGCGAUUGGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 27766 | 0.74 | 0.242589 |
Target: 5'- aCCgCGGAGGCCCucguGUCGCUAGCUgACCg -3' miRNA: 3'- -GG-GUUUUCGGG----CGGCGAUUGGgUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 34307 | 0.73 | 0.262048 |
Target: 5'- gCCCGAGcAGCCCG-CGCU-GCCCGCg- -3' miRNA: 3'- -GGGUUU-UCGGGCgGCGAuUGGGUGga -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 51545 | 0.73 | 0.275714 |
Target: 5'- cCCCugc-GCCCGCCGCUAcCgCUGCCg -3' miRNA: 3'- -GGGuuuuCGGGCGGCGAUuG-GGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 30027 | 0.73 | 0.289944 |
Target: 5'- gCCCAGGccgccAGCgCCGCCGUcGACaCCGCCc -3' miRNA: 3'- -GGGUUU-----UCG-GGCGGCGaUUG-GGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 48075 | 0.72 | 0.317772 |
Target: 5'- cCCCGAAgcgccucgacggguGGCgCUGCCGCUGcGCCCGCg- -3' miRNA: 3'- -GGGUUU--------------UCG-GGCGGCGAU-UGGGUGga -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 24788 | 0.72 | 0.328016 |
Target: 5'- cCCCGAccGAGCCCGCCcccgagGC--GCCCACg- -3' miRNA: 3'- -GGGUU--UUCGGGCGG------CGauUGGGUGga -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 43021 | 0.72 | 0.328016 |
Target: 5'- cCUCGAucAGCCCGCCGUcacGGCCCcacGCCUc -3' miRNA: 3'- -GGGUUu-UCGGGCGGCGa--UUGGG---UGGA- -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 18495 | 0.71 | 0.336061 |
Target: 5'- cCCCGAGGGCCUGCagcauGCUcucGGgCCGCCg -3' miRNA: 3'- -GGGUUUUCGGGCGg----CGA---UUgGGUGGa -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 7050 | 0.71 | 0.36105 |
Target: 5'- gCCCGGccGCUCGCC-CUGACCggaCACCUu -3' miRNA: 3'- -GGGUUuuCGGGCGGcGAUUGG---GUGGA- -5' |
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12993 | 5' | -56.3 | NC_003387.1 | + | 25056 | 0.71 | 0.364479 |
Target: 5'- gCC-AGAGCugcgagauacugccgCCGCCGUUGACCCACg- -3' miRNA: 3'- gGGuUUUCG---------------GGCGGCGAUUGGGUGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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