miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 5' -56.3 NC_003387.1 + 1317 0.66 0.666026
Target:  5'- gCCgCAGgcGCUCGCCGgUcACCgGCCg -3'
miRNA:   3'- -GG-GUUuuCGGGCGGCgAuUGGgUGGa -5'
12993 5' -56.3 NC_003387.1 + 1781 0.69 0.467131
Target:  5'- gCCCGAgcugaAAGCCCGCaaggucaaggugaaGCUGACCgGCg- -3'
miRNA:   3'- -GGGUU-----UUCGGGCGg-------------CGAUUGGgUGga -5'
12993 5' -56.3 NC_003387.1 + 1936 0.67 0.586037
Target:  5'- gCCCGAuccgcgacgcAGGCgguuggggcugggaCCGCCGC-GACCCgACCUg -3'
miRNA:   3'- -GGGUU----------UUCG--------------GGCGGCGaUUGGG-UGGA- -5'
12993 5' -56.3 NC_003387.1 + 1996 0.68 0.503854
Target:  5'- aCCAuuAGUggCCGUgaCGCUGGCCCugCUc -3'
miRNA:   3'- gGGUuuUCG--GGCG--GCGAUUGGGugGA- -5'
12993 5' -56.3 NC_003387.1 + 3172 0.67 0.578419
Target:  5'- uCCgCGGAGGCCCucgcaGCCGCggaGGCCaACCa -3'
miRNA:   3'- -GG-GUUUUCGGG-----CGGCGa--UUGGgUGGa -5'
12993 5' -56.3 NC_003387.1 + 3482 0.67 0.556781
Target:  5'- cCCCGGcgucGAGCa-GCCGCUcGgCCGCCUc -3'
miRNA:   3'- -GGGUU----UUCGggCGGCGAuUgGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 3779 0.78 0.126931
Target:  5'- gCCGAGcAGCCCGcCCGCcagcAACCCGCCg -3'
miRNA:   3'- gGGUUU-UCGGGC-GGCGa---UUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 3886 0.67 0.578419
Target:  5'- gCCGGAaccGGCgCCGCUGCccGACCCugACCg -3'
miRNA:   3'- gGGUUU---UCG-GGCGGCGa-UUGGG--UGGa -5'
12993 5' -56.3 NC_003387.1 + 4232 0.76 0.181342
Target:  5'- aCCUgcAGGCCCGCCGCgacGGCCuCACUa -3'
miRNA:   3'- -GGGuuUUCGGGCGGCGa--UUGG-GUGGa -5'
12993 5' -56.3 NC_003387.1 + 4467 0.78 0.130514
Target:  5'- gCCGAccgccGAGCCCGCCGCgaaggccgAGCCCGCg- -3'
miRNA:   3'- gGGUU-----UUCGGGCGGCGa-------UUGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 4471 0.69 0.483289
Target:  5'- gCCCGAGcuGCUgGCCGC-GGCCgACCg -3'
miRNA:   3'- -GGGUUUu-CGGgCGGCGaUUGGgUGGa -5'
12993 5' -56.3 NC_003387.1 + 4801 0.68 0.493523
Target:  5'- gCCCAu--GCCUGCCGCcGACCaGCg- -3'
miRNA:   3'- -GGGUuuuCGGGCGGCGaUUGGgUGga -5'
12993 5' -56.3 NC_003387.1 + 5412 0.68 0.535382
Target:  5'- aCCGAaggcAAGCCCGCCGaggacAACUCgACCg -3'
miRNA:   3'- gGGUU----UUCGGGCGGCga---UUGGG-UGGa -5'
12993 5' -56.3 NC_003387.1 + 5546 0.68 0.546048
Target:  5'- cCCCGAGGGCgaccaccagggCCaCCGCgguGCCCGCUa -3'
miRNA:   3'- -GGGUUUUCG-----------GGcGGCGau-UGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 5904 0.68 0.52479
Target:  5'- -gCAGAAGCauugCGCCGCUuACgCGCCg -3'
miRNA:   3'- ggGUUUUCGg---GCGGCGAuUGgGUGGa -5'
12993 5' -56.3 NC_003387.1 + 5981 0.66 0.659461
Target:  5'- aCCCGGccGGUugCCGCCGUgcaucguccacucGCCCGCCUg -3'
miRNA:   3'- -GGGUUu-UCG--GGCGGCGau-----------UGGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 6420 0.78 0.126931
Target:  5'- uCCCAGcGGCCCGCUGCg---CCGCCUg -3'
miRNA:   3'- -GGGUUuUCGGGCGGCGauugGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 6641 0.69 0.453226
Target:  5'- gCCGucuuGGGCUCGUCGUcGACCCGCUc -3'
miRNA:   3'- gGGUu---UUCGGGCGGCGaUUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 7050 0.71 0.36105
Target:  5'- gCCCGGccGCUCGCC-CUGACCggaCACCUu -3'
miRNA:   3'- -GGGUUuuCGGGCGGcGAUUGG---GUGGA- -5'
12993 5' -56.3 NC_003387.1 + 7206 0.67 0.600233
Target:  5'- gUCAAugguGGCCgCGgUGCUGACCCgGCCg -3'
miRNA:   3'- gGGUUu---UCGG-GCgGCGAUUGGG-UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.