miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 5' -56.3 NC_003387.1 + 48596 1.09 0.00071
Target:  5'- aCCCAAAAGCCCGCCGCUAACCCACCUc -3'
miRNA:   3'- -GGGUUUUCGGGCGGCGAUUGGGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 8400 0.7 0.38641
Target:  5'- gCCucAAGCCCGCCcgccguaGCUAACC-GCCg -3'
miRNA:   3'- gGGuuUUCGGGCGG-------CGAUUGGgUGGa -5'
12993 5' -56.3 NC_003387.1 + 22515 0.7 0.405493
Target:  5'- aUCAu--GCCCGCCGC-GACCCugGCCc -3'
miRNA:   3'- gGGUuuuCGGGCGGCGaUUGGG--UGGa -5'
12993 5' -56.3 NC_003387.1 + 17732 0.66 0.655079
Target:  5'- cCCCGGcccGGCCgGgCCGCcaggGGCCaCACCg -3'
miRNA:   3'- -GGGUUu--UCGGgC-GGCGa---UUGG-GUGGa -5'
12993 5' -56.3 NC_003387.1 + 35714 0.75 0.212845
Target:  5'- -aCGAcGGCCUGCCGCUGACCgAgCUg -3'
miRNA:   3'- ggGUUuUCGGGCGGCGAUUGGgUgGA- -5'
12993 5' -56.3 NC_003387.1 + 45759 0.74 0.218532
Target:  5'- gUCCGAGGGCgCGCUGUggcgccuGCCCGCCg -3'
miRNA:   3'- -GGGUUUUCGgGCGGCGau-----UGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 27766 0.74 0.242589
Target:  5'- aCCgCGGAGGCCCucguGUCGCUAGCUgACCg -3'
miRNA:   3'- -GG-GUUUUCGGG----CGGCGAUUGGgUGGa -5'
12993 5' -56.3 NC_003387.1 + 34307 0.73 0.262048
Target:  5'- gCCCGAGcAGCCCG-CGCU-GCCCGCg- -3'
miRNA:   3'- -GGGUUU-UCGGGCgGCGAuUGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 48075 0.72 0.317772
Target:  5'- cCCCGAAgcgccucgacggguGGCgCUGCCGCUGcGCCCGCg- -3'
miRNA:   3'- -GGGUUU--------------UCG-GGCGGCGAU-UGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 28148 0.71 0.369663
Target:  5'- cCCCAcgaucGAGCCCgGCCaGCUcGGCUCGCCg -3'
miRNA:   3'- -GGGUu----UUCGGG-CGG-CGA-UUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 35622 0.71 0.364479
Target:  5'- cCCCGAgGAGCCCGCCgaggcggccgggcggGCacUGGCCgACCUc -3'
miRNA:   3'- -GGGUU-UUCGGGCGG---------------CG--AUUGGgUGGA- -5'
12993 5' -56.3 NC_003387.1 + 30027 0.73 0.289944
Target:  5'- gCCCAGGccgccAGCgCCGCCGUcGACaCCGCCc -3'
miRNA:   3'- -GGGUUU-----UCG-GGCGGCGaUUG-GGUGGa -5'
12993 5' -56.3 NC_003387.1 + 3779 0.78 0.126931
Target:  5'- gCCGAGcAGCCCGcCCGCcagcAACCCGCCg -3'
miRNA:   3'- gGGUUU-UCGGGC-GGCGa---UUGGGUGGa -5'
12993 5' -56.3 NC_003387.1 + 17154 0.71 0.369663
Target:  5'- aCCGGcGGCCCGCgcugaGCUGguGCgCCGCCUg -3'
miRNA:   3'- gGGUUuUCGGGCGg----CGAU--UG-GGUGGA- -5'
12993 5' -56.3 NC_003387.1 + 4467 0.78 0.130514
Target:  5'- gCCGAccgccGAGCCCGCCGCgaaggccgAGCCCGCg- -3'
miRNA:   3'- gGGUU-----UUCGGGCGGCGa-------UUGGGUGga -5'
12993 5' -56.3 NC_003387.1 + 51545 0.73 0.275714
Target:  5'- cCCCugc-GCCCGCCGCUAcCgCUGCCg -3'
miRNA:   3'- -GGGuuuuCGGGCGGCGAUuG-GGUGGa -5'
12993 5' -56.3 NC_003387.1 + 44747 0.71 0.369663
Target:  5'- gCCGAAGcgcagcacgccGCCCGCCGUgaagcGGCCCgACCUc -3'
miRNA:   3'- gGGUUUU-----------CGGGCGGCGa----UUGGG-UGGA- -5'
12993 5' -56.3 NC_003387.1 + 49820 0.7 0.387306
Target:  5'- gCCCGc-GGCCUGCCGC--GCCCGgCg -3'
miRNA:   3'- -GGGUuuUCGGGCGGCGauUGGGUgGa -5'
12993 5' -56.3 NC_003387.1 + 4232 0.76 0.181342
Target:  5'- aCCUgcAGGCCCGCCGCgacGGCCuCACUa -3'
miRNA:   3'- -GGGuuUUCGGGCGGCGa--UUGG-GUGGa -5'
12993 5' -56.3 NC_003387.1 + 8065 0.74 0.224349
Target:  5'- gCUGGcGGCCCG-CGCUAACCCGCUg -3'
miRNA:   3'- gGGUUuUCGGGCgGCGAUUGGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.