miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12994 3' -54.2 NC_003387.1 + 21690 0.66 0.807841
Target:  5'- aCGCC-CuggccgCCUCGGcGAGCGcggccCGCGCc -3'
miRNA:   3'- -GCGGaGuua---GGAGCC-CUUGCa----GUGCG- -5'
12994 3' -54.2 NC_003387.1 + 50629 0.66 0.807841
Target:  5'- aGCCUaCAAUgucgaacuucaCCgcCGaGGAccGCGUCGCGCa -3'
miRNA:   3'- gCGGA-GUUA-----------GGa-GC-CCU--UGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 19257 0.66 0.787557
Target:  5'- cCGCCUCGGcgaCUUCGGccgccuugcgcgaGGugGUgGCGCg -3'
miRNA:   3'- -GCGGAGUUa--GGAGCC-------------CUugCAgUGCG- -5'
12994 3' -54.2 NC_003387.1 + 34588 0.66 0.778641
Target:  5'- cCGCCUUGAggugCC-CGGuGAcguacgGCGUcCACGCa -3'
miRNA:   3'- -GCGGAGUUa---GGaGCC-CU------UGCA-GUGCG- -5'
12994 3' -54.2 NC_003387.1 + 23735 0.66 0.778641
Target:  5'- gCGCaggCGAUCCagCGGucGGGCGUCcCGCa -3'
miRNA:   3'- -GCGga-GUUAGGa-GCC--CUUGCAGuGCG- -5'
12994 3' -54.2 NC_003387.1 + 20460 0.66 0.778641
Target:  5'- aCGCCUUGucggCCUCGGcGACGgcCAgGCg -3'
miRNA:   3'- -GCGGAGUua--GGAGCCcUUGCa-GUgCG- -5'
12994 3' -54.2 NC_003387.1 + 39674 0.66 0.768589
Target:  5'- uGuCCUCGAUagCCUUGucGGCGUUGCGCa -3'
miRNA:   3'- gC-GGAGUUA--GGAGCccUUGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 18135 0.66 0.768589
Target:  5'- cCGCCUCGuUCCaccgCGGGuaaccCGUCAUcgGCc -3'
miRNA:   3'- -GCGGAGUuAGGa---GCCCuu---GCAGUG--CG- -5'
12994 3' -54.2 NC_003387.1 + 40505 0.66 0.767577
Target:  5'- aCGCCggggCAcgCCgggaaugUCGGGAACGgugaACGUc -3'
miRNA:   3'- -GCGGa---GUuaGG-------AGCCCUUGCag--UGCG- -5'
12994 3' -54.2 NC_003387.1 + 11333 0.67 0.748078
Target:  5'- gCGCCUCGGUCgCcCGGcGcuCGgccUCACGCu -3'
miRNA:   3'- -GCGGAGUUAG-GaGCC-CuuGC---AGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 29351 0.67 0.748078
Target:  5'- gCGCUUC-AUCCUCGGcGAccugacCGUCagcgGCGCc -3'
miRNA:   3'- -GCGGAGuUAGGAGCC-CUu-----GCAG----UGCG- -5'
12994 3' -54.2 NC_003387.1 + 20811 0.67 0.73764
Target:  5'- aGCCaccgcUCGGagCagGGGAuACGUCGCGCg -3'
miRNA:   3'- gCGG-----AGUUagGagCCCU-UGCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 3506 0.67 0.734488
Target:  5'- cCGCCUCGAccggcagaUCCguugCGGGcucagcAACGUCgacggccgccgccuGCGCg -3'
miRNA:   3'- -GCGGAGUU--------AGGa---GCCC------UUGCAG--------------UGCG- -5'
12994 3' -54.2 NC_003387.1 + 19124 0.67 0.727097
Target:  5'- uGCCaCA--CCUcggCGGGAucuuCGUCGCGCa -3'
miRNA:   3'- gCGGaGUuaGGA---GCCCUu---GCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 38788 0.67 0.716458
Target:  5'- aCGCUguaCAG-CCUCGGcGGCGUCAUGg -3'
miRNA:   3'- -GCGGa--GUUaGGAGCCcUUGCAGUGCg -5'
12994 3' -54.2 NC_003387.1 + 11509 0.67 0.716458
Target:  5'- uGCCUaCGAUCgUCGGccuGCGUguCGCc -3'
miRNA:   3'- gCGGA-GUUAGgAGCCcu-UGCAguGCG- -5'
12994 3' -54.2 NC_003387.1 + 43330 0.67 0.705737
Target:  5'- gCGCCgggCAAuuUCCUgcucgcgggcCGGGAGCGgCACGa -3'
miRNA:   3'- -GCGGa--GUU--AGGA----------GCCCUUGCaGUGCg -5'
12994 3' -54.2 NC_003387.1 + 23555 0.68 0.696026
Target:  5'- cCGuCCUCGAUCgUCGGGucggcgaaugccguUGUCAUGUc -3'
miRNA:   3'- -GC-GGAGUUAGgAGCCCuu------------GCAGUGCG- -5'
12994 3' -54.2 NC_003387.1 + 31786 0.68 0.694944
Target:  5'- aCGCCgc---CCUCGGGAACGUaauagACGa -3'
miRNA:   3'- -GCGGaguuaGGAGCCCUUGCAg----UGCg -5'
12994 3' -54.2 NC_003387.1 + 39640 0.68 0.694944
Target:  5'- aGCCUCGA-CC-CGG---UGUCGCGCa -3'
miRNA:   3'- gCGGAGUUaGGaGCCcuuGCAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.