miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 3' -56.2 NC_003387.1 + 34241 0.66 0.700943
Target:  5'- gGCCcucgGGGCGCucGACcgGCuGAUCGCCGAGu -3'
miRNA:   3'- aUGG----CUCGUG--CUG--UG-CUAGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 41325 0.66 0.679474
Target:  5'- gGCCGAuCGCGGCcaGCGuggCGCCGAu- -3'
miRNA:   3'- aUGGCUcGUGCUG--UGCua-GCGGCUcc -5'
12997 3' -56.2 NC_003387.1 + 42379 0.66 0.679474
Target:  5'- uUACCGGGguCGGCcguauCGA-CGCCGcGGc -3'
miRNA:   3'- -AUGGCUCguGCUGu----GCUaGCGGCuCC- -5'
12997 3' -56.2 NC_003387.1 + 1295 0.66 0.679474
Target:  5'- gACCGGcGCAguuCGAgGCGG-CGCCGcAGGc -3'
miRNA:   3'- aUGGCU-CGU---GCUgUGCUaGCGGC-UCC- -5'
12997 3' -56.2 NC_003387.1 + 868 0.66 0.679474
Target:  5'- cACCGGGgccacCGCGGCAgCGA-CGCCGgucAGGa -3'
miRNA:   3'- aUGGCUC-----GUGCUGU-GCUaGCGGC---UCC- -5'
12997 3' -56.2 NC_003387.1 + 51433 0.66 0.676236
Target:  5'- cGCCaGGGCGuCGAgGCGcAucaccgugaacaccUCGCCGGGGu -3'
miRNA:   3'- aUGG-CUCGU-GCUgUGC-U--------------AGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 33699 0.66 0.668667
Target:  5'- gGCCGGGguCGAUccaucCGAacagguUCGUCGAGGc -3'
miRNA:   3'- aUGGCUCguGCUGu----GCU------AGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 24405 0.66 0.668667
Target:  5'- gGCUGAucuGCACGccCGCGAUa-CCGAGGg -3'
miRNA:   3'- aUGGCU---CGUGCu-GUGCUAgcGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 39206 0.66 0.667585
Target:  5'- gGCCGAcGCugucaGCGACuccaccgGCGAaccCGCCGGGGc -3'
miRNA:   3'- aUGGCU-CG-----UGCUG-------UGCUa--GCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 43574 0.66 0.679474
Target:  5'- cGCUGuacuGCACGACGUGGUUGCCGu-- -3'
miRNA:   3'- aUGGCu---CGUGCUGUGCUAGCGGCucc -5'
12997 3' -56.2 NC_003387.1 + 9784 0.66 0.690236
Target:  5'- uUGgCGAGCGCGAcCAUG-UUGUCGAGc -3'
miRNA:   3'- -AUgGCUCGUGCU-GUGCuAGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 33981 0.66 0.690236
Target:  5'- cUGCCGcAGCGgGuCGCGGUCGacgaCGAGc -3'
miRNA:   3'- -AUGGC-UCGUgCuGUGCUAGCg---GCUCc -5'
12997 3' -56.2 NC_003387.1 + 18805 0.66 0.700943
Target:  5'- aGCuCGGGguCGguuugcGCGCaGAUCGCCGAcGGg -3'
miRNA:   3'- aUG-GCUCguGC------UGUG-CUAGCGGCU-CC- -5'
12997 3' -56.2 NC_003387.1 + 8454 0.66 0.700943
Target:  5'- aGCCaccGCGCGGCGCGGUguuUGCUGcAGGc -3'
miRNA:   3'- aUGGcu-CGUGCUGUGCUA---GCGGC-UCC- -5'
12997 3' -56.2 NC_003387.1 + 3748 0.66 0.700943
Target:  5'- gGCCGcauGCccGCGuGCACGAUCGCCa--- -3'
miRNA:   3'- aUGGCu--CG--UGC-UGUGCUAGCGGcucc -5'
12997 3' -56.2 NC_003387.1 + 31160 0.66 0.699875
Target:  5'- cGCCuGGGCcacggucugcacgACGACGCGGgcgUCGCCGGu- -3'
miRNA:   3'- aUGG-CUCG-------------UGCUGUGCU---AGCGGCUcc -5'
12997 3' -56.2 NC_003387.1 + 48726 0.66 0.697737
Target:  5'- cACCGuGCgccGCGACgaguccaugaccgcGCgGGUCGCCGAGc -3'
miRNA:   3'- aUGGCuCG---UGCUG--------------UG-CUAGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 52378 0.66 0.694526
Target:  5'- gAUCGAccGCGCGcACGCGGaucuuggcgugcgugUCGCCGGGc -3'
miRNA:   3'- aUGGCU--CGUGC-UGUGCU---------------AGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 19045 0.66 0.690236
Target:  5'- cGCCGAGU-CGAgGuCGAccaUCGCCGccAGGg -3'
miRNA:   3'- aUGGCUCGuGCUgU-GCU---AGCGGC--UCC- -5'
12997 3' -56.2 NC_003387.1 + 45414 0.66 0.690236
Target:  5'- aGCCGAcagGUACGGCcccgGCGAguuacCGCCGGGc -3'
miRNA:   3'- aUGGCU---CGUGCUG----UGCUa----GCGGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.