miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 3' -56.2 NC_003387.1 + 1 0.67 0.614336
Target:  5'- aUGCCGcgaGGgGCGcCGCGAUCGUucgCGGGGc -3'
miRNA:   3'- -AUGGC---UCgUGCuGUGCUAGCG---GCUCC- -5'
12997 3' -56.2 NC_003387.1 + 156 0.69 0.477257
Target:  5'- cGCCGAGCugGGCcUGcUgGCCGAcGGc -3'
miRNA:   3'- aUGGCUCGugCUGuGCuAgCGGCU-CC- -5'
12997 3' -56.2 NC_003387.1 + 282 0.66 0.668667
Target:  5'- cGCCGGucgaguGCACGAuCACGAccgaGCCGGuGGa -3'
miRNA:   3'- aUGGCU------CGUGCU-GUGCUag--CGGCU-CC- -5'
12997 3' -56.2 NC_003387.1 + 617 0.67 0.613249
Target:  5'- gGCCGAGCAgGGCgagggcaGCG-UCGCCGccgcGGc -3'
miRNA:   3'- aUGGCUCGUgCUG-------UGCuAGCGGCu---CC- -5'
12997 3' -56.2 NC_003387.1 + 868 0.66 0.679474
Target:  5'- cACCGGGgccacCGCGGCAgCGA-CGCCGgucAGGa -3'
miRNA:   3'- aUGGCUC-----GUGCUGU-GCUaGCGGC---UCC- -5'
12997 3' -56.2 NC_003387.1 + 1295 0.66 0.679474
Target:  5'- gACCGGcGCAguuCGAgGCGG-CGCCGcAGGc -3'
miRNA:   3'- aUGGCU-CGU---GCUgUGCUaGCGGC-UCC- -5'
12997 3' -56.2 NC_003387.1 + 1614 0.67 0.591561
Target:  5'- gGCCGGGCGCGugugggcagccucGCGCGGguugcgCGCUGuuuuGGg -3'
miRNA:   3'- aUGGCUCGUGC-------------UGUGCUa-----GCGGCu---CC- -5'
12997 3' -56.2 NC_003387.1 + 1691 0.73 0.287099
Target:  5'- cACCGcGGCGgcgguCGACugGAUCGCUGAGcGg -3'
miRNA:   3'- aUGGC-UCGU-----GCUGugCUAGCGGCUC-C- -5'
12997 3' -56.2 NC_003387.1 + 1966 0.66 0.654571
Target:  5'- gGCCGGGCAgcgccagcuugaccUGaaacGCACGG-CGUCGAGGu -3'
miRNA:   3'- aUGGCUCGU--------------GC----UGUGCUaGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 2048 0.7 0.41911
Target:  5'- cGCCGAGCugGcCGCGGUggcggCGCCauguucgugugaGAGGg -3'
miRNA:   3'- aUGGCUCGugCuGUGCUA-----GCGG------------CUCC- -5'
12997 3' -56.2 NC_003387.1 + 2168 0.67 0.636089
Target:  5'- aGCCgcGAGCAgcuCGGCGCcuuGGUCGCCGAc- -3'
miRNA:   3'- aUGG--CUCGU---GCUGUG---CUAGCGGCUcc -5'
12997 3' -56.2 NC_003387.1 + 2268 0.66 0.654571
Target:  5'- gGCCGGGguCGGCucgACGucguccucgcuggcGUaCGCCGAGGc -3'
miRNA:   3'- aUGGCUCguGCUG---UGC--------------UA-GCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 2532 0.69 0.487337
Target:  5'- gGCCGGuGUucCGcACGCGGUCGCCGcGGc -3'
miRNA:   3'- aUGGCU-CGu-GC-UGUGCUAGCGGCuCC- -5'
12997 3' -56.2 NC_003387.1 + 2779 0.82 0.078573
Target:  5'- gAUCGAGCACGGCGCGA-CGuUCGAGGg -3'
miRNA:   3'- aUGGCUCGUGCUGUGCUaGC-GGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 2840 0.69 0.518152
Target:  5'- gGCCGcgacGCcgACGACAUGAUCGUCgguGAGGu -3'
miRNA:   3'- aUGGCu---CG--UGCUGUGCUAGCGG---CUCC- -5'
12997 3' -56.2 NC_003387.1 + 2904 0.72 0.357003
Target:  5'- cGCCGGGCGCGGCA-GGcCGCgggCGAGGc -3'
miRNA:   3'- aUGGCUCGUGCUGUgCUaGCG---GCUCC- -5'
12997 3' -56.2 NC_003387.1 + 3103 0.67 0.614336
Target:  5'- aUGCUGcAGCACGugGCGAUgGUCGc-- -3'
miRNA:   3'- -AUGGC-UCGUGCugUGCUAgCGGCucc -5'
12997 3' -56.2 NC_003387.1 + 3292 0.67 0.581841
Target:  5'- -cCCGA-CACGGCcgccgacuCGggCGCCGAGGu -3'
miRNA:   3'- auGGCUcGUGCUGu-------GCuaGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 3336 0.68 0.549712
Target:  5'- cACCGAGgccCGCucguuuGGCGCGGUCGUCGAcGGc -3'
miRNA:   3'- aUGGCUC---GUG------CUGUGCUAGCGGCU-CC- -5'
12997 3' -56.2 NC_003387.1 + 3585 0.67 0.62521
Target:  5'- cACCGAcacguguacagGCGCGACgggugacaGCGGgugcgCGUCGAGGu -3'
miRNA:   3'- aUGGCU-----------CGUGCUG--------UGCUa----GCGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.