miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 3' -56.2 NC_003387.1 + 50087 1.08 0.001058
Target:  5'- uUACCGAGCACGACACGAUCGCCGAGGc -3'
miRNA:   3'- -AUGGCUCGUGCUGUGCUAGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 4493 0.87 0.035119
Target:  5'- gACCGGGCGCGACACGAUCGUgCGGGu -3'
miRNA:   3'- aUGGCUCGUGCUGUGCUAGCG-GCUCc -5'
12997 3' -56.2 NC_003387.1 + 6790 0.86 0.040601
Target:  5'- gGCCGAGCGCGACAUGGUCGCCc--- -3'
miRNA:   3'- aUGGCUCGUGCUGUGCUAGCGGcucc -5'
12997 3' -56.2 NC_003387.1 + 2779 0.82 0.078573
Target:  5'- gAUCGAGCACGGCGCGA-CGuUCGAGGg -3'
miRNA:   3'- aUGGCUCGUGCUGUGCUaGC-GGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 9429 0.81 0.083156
Target:  5'- --aCGAGUACGACGCGggCGCCGAGc -3'
miRNA:   3'- augGCUCGUGCUGUGCuaGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 13647 0.81 0.083156
Target:  5'- cACCGucGGCgGCGGCuCGGUCGCCGAGGg -3'
miRNA:   3'- aUGGC--UCG-UGCUGuGCUAGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 4422 0.8 0.104159
Target:  5'- cGCCGAGCugGGCaagGCGuUCGCCGAGc -3'
miRNA:   3'- aUGGCUCGugCUG---UGCuAGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 41018 0.8 0.109225
Target:  5'- gGCCGGGUcgacugcgucgacgGCGACauugacacccacGCGAUCGCCGAGGc -3'
miRNA:   3'- aUGGCUCG--------------UGCUG------------UGCUAGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 43203 0.79 0.119726
Target:  5'- gGCCGGGUACGcgGCGAUCGgCGAGGu -3'
miRNA:   3'- aUGGCUCGUGCugUGCUAGCgGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 33580 0.79 0.123089
Target:  5'- uUGCUGAGCGCGuGCGCGAcgaagauccCGCCGAGGu -3'
miRNA:   3'- -AUGGCUCGUGC-UGUGCUa--------GCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 42325 0.79 0.130079
Target:  5'- uUGCCGAGCGCcgaACcGUCGCCGAGGu -3'
miRNA:   3'- -AUGGCUCGUGcugUGcUAGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 10015 0.79 0.130079
Target:  5'- gGCCGGGCgACGACgacgACGAgccgaagcgCGCCGAGGg -3'
miRNA:   3'- aUGGCUCG-UGCUG----UGCUa--------GCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 35589 0.77 0.157521
Target:  5'- gGCCGAGCugguCGACacaGCGAUCGCCuacggccccGAGGa -3'
miRNA:   3'- aUGGCUCGu---GCUG---UGCUAGCGG---------CUCC- -5'
12997 3' -56.2 NC_003387.1 + 9379 0.76 0.187081
Target:  5'- gGCCGAG-GCGACccccgaggcgggcaaGaCGAUCGCCGAGGa -3'
miRNA:   3'- aUGGCUCgUGCUG---------------U-GCUAGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 32229 0.76 0.189586
Target:  5'- cUGCgCGAGCGCGACGagcuggcCGAccgccuggccgUCGCCGAGGc -3'
miRNA:   3'- -AUG-GCUCGUGCUGU-------GCU-----------AGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 27234 0.76 0.19009
Target:  5'- gGCCGAGC-UGACACGcgCGgUCGAGGc -3'
miRNA:   3'- aUGGCUCGuGCUGUGCuaGC-GGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 43814 0.76 0.19009
Target:  5'- --aCGAGUGCuGCACGAUCGgCGAGGg -3'
miRNA:   3'- augGCUCGUGcUGUGCUAGCgGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 44373 0.76 0.200428
Target:  5'- aUGCCGAacagcgGCACGuCGgGGUCGUCGAGGu -3'
miRNA:   3'- -AUGGCU------CGUGCuGUgCUAGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 3813 0.75 0.205779
Target:  5'- cACCGcaAGCGCGACaACGAUCGUC-AGGg -3'
miRNA:   3'- aUGGC--UCGUGCUG-UGCUAGCGGcUCC- -5'
12997 3' -56.2 NC_003387.1 + 26479 0.75 0.211253
Target:  5'- gACCaucAGCACG--GCGAUCGCCGGGGc -3'
miRNA:   3'- aUGGc--UCGUGCugUGCUAGCGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.