miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 5' -60.2 NC_003387.1 + 45507 0.72 0.181876
Target:  5'- cGUCGGCCgggucagCACCGCGGCC-ACCa--- -3'
miRNA:   3'- -UAGCUGGa------GUGGCGCCGGcUGGacau -5'
12999 5' -60.2 NC_003387.1 + 51036 0.67 0.349854
Target:  5'- aGUCGACCgcCGCCGCGGugucgguaCCGGCCc--- -3'
miRNA:   3'- -UAGCUGGa-GUGGCGCC--------GGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 10875 0.67 0.349854
Target:  5'- -aCGACCgccgucgGCCGCuGGCCGACCa--- -3'
miRNA:   3'- uaGCUGGag-----UGGCG-CCGGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 24787 0.68 0.318097
Target:  5'- -cCGGaaccgCUCGgggUCGCGGCCGACCUGg- -3'
miRNA:   3'- uaGCUg----GAGU---GGCGCCGGCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 2382 0.68 0.318097
Target:  5'- gGUC-ACgUUGCCGCGGgCGGCCUGa- -3'
miRNA:   3'- -UAGcUGgAGUGGCGCCgGCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 20466 0.68 0.309752
Target:  5'- uGUCGGCCUCggcgacgGCCagGCGGUCGGCCa--- -3'
miRNA:   3'- -UAGCUGGAG-------UGG--CGCCGGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 7608 0.68 0.295734
Target:  5'- cGUC-ACCUCguacACCGCGGCgucgaCGACCUGg- -3'
miRNA:   3'- -UAGcUGGAG----UGGCGCCG-----GCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 4473 0.68 0.295734
Target:  5'- -cCGAgcugCUgGCCGCGGCCGACCgGg- -3'
miRNA:   3'- uaGCUg---GAgUGGCGCCGGCUGGaCau -5'
12999 5' -60.2 NC_003387.1 + 42386 0.71 0.209599
Target:  5'- gGUCGGCCguaucgaCGCCGCGGCUGAuucccuugcccgcguCCUGg- -3'
miRNA:   3'- -UAGCUGGa------GUGGCGCCGGCU---------------GGACau -5'
12999 5' -60.2 NC_003387.1 + 6930 0.67 0.358138
Target:  5'- uGUCGGCCaUCAUCGCGGCCuGCg---- -3'
miRNA:   3'- -UAGCUGG-AGUGGCGCCGGcUGgacau -5'
12999 5' -60.2 NC_003387.1 + 24873 0.67 0.358138
Target:  5'- uGUCGAUCguggCGCCGCGGCugucgaacuCGACCg--- -3'
miRNA:   3'- -UAGCUGGa---GUGGCGCCG---------GCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 17225 0.67 0.366559
Target:  5'- cGUCGGCC-CACCaCGGCCG-CUUGc- -3'
miRNA:   3'- -UAGCUGGaGUGGcGCCGGCuGGACau -5'
12999 5' -60.2 NC_003387.1 + 46302 0.66 0.41987
Target:  5'- -aCGGCCuggcccgcagUCACCGCGGCCGgaaucagcGCCgGg- -3'
miRNA:   3'- uaGCUGG----------AGUGGCGCCGGC--------UGGaCau -5'
12999 5' -60.2 NC_003387.1 + 48098 0.66 0.410662
Target:  5'- uAUCGGCCUUgGCCGCcuuGGCCGcCUUGg- -3'
miRNA:   3'- -UAGCUGGAG-UGGCG---CCGGCuGGACau -5'
12999 5' -60.2 NC_003387.1 + 7767 0.66 0.410662
Target:  5'- -gCGGCCUgaGCCGCGGCCugaGCCUu-- -3'
miRNA:   3'- uaGCUGGAg-UGGCGCCGGc--UGGAcau -5'
12999 5' -60.2 NC_003387.1 + 27359 0.66 0.40158
Target:  5'- cUCGACCUCGCCGCucUUGGCgCUGg- -3'
miRNA:   3'- uAGCUGGAGUGGCGccGGCUG-GACau -5'
12999 5' -60.2 NC_003387.1 + 7859 0.66 0.392627
Target:  5'- cUCGGCCagCACCuuGCGGCagugcaaaucgaCGACCUGg- -3'
miRNA:   3'- uAGCUGGa-GUGG--CGCCG------------GCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 10972 0.67 0.375115
Target:  5'- gGUCGcACa-CACCGCGGCCaGCCggGUGa -3'
miRNA:   3'- -UAGC-UGgaGUGGCGCCGGcUGGa-CAU- -5'
12999 5' -60.2 NC_003387.1 + 6370 0.67 0.375115
Target:  5'- cUUGGCCUCgGCCGCGGgCGACg---- -3'
miRNA:   3'- uAGCUGGAG-UGGCGCCgGCUGgacau -5'
12999 5' -60.2 NC_003387.1 + 5152 0.67 0.375115
Target:  5'- gGUCGAgCUUCACCgacacgcgaguGCGGCCGACgaGc- -3'
miRNA:   3'- -UAGCU-GGAGUGG-----------CGCCGGCUGgaCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.