miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13003 3' -56.8 NC_003387.1 + 39169 0.7 0.39208
Target:  5'- uCGAUCGggcugcccAGGCCCUugaacaGCGaGCCCagGCCg -3'
miRNA:   3'- cGCUAGU--------UCCGGGA------CGCaUGGGa-CGG- -5'
13003 3' -56.8 NC_003387.1 + 42072 0.7 0.401127
Target:  5'- cGCG-UCGAGGCCgaacGcCGUACCCUucaccGCCg -3'
miRNA:   3'- -CGCuAGUUCCGGga--C-GCAUGGGA-----CGG- -5'
13003 3' -56.8 NC_003387.1 + 12348 0.7 0.401127
Target:  5'- cCGAcgUCGAGGCCCU-UGgcCCCgGCCg -3'
miRNA:   3'- cGCU--AGUUCCGGGAcGCauGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 47530 0.7 0.401127
Target:  5'- gGCGccaCAgccGGGCCUUGa-UGCCCUGCCc -3'
miRNA:   3'- -CGCua-GU---UCCGGGACgcAUGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 6382 0.7 0.401127
Target:  5'- cGCGggCGAcGCCUUGCGUgggcgGCCCcgcuUGCCc -3'
miRNA:   3'- -CGCuaGUUcCGGGACGCA-----UGGG----ACGG- -5'
13003 3' -56.8 NC_003387.1 + 25114 0.7 0.410305
Target:  5'- gGUGucGUCGAGGCCCU-CGUACCagcgGCa -3'
miRNA:   3'- -CGC--UAGUUCCGGGAcGCAUGGga--CGg -5'
13003 3' -56.8 NC_003387.1 + 51718 0.69 0.426204
Target:  5'- gGCGAUCuugucgcgcuucgcGAGGCCCUGC--AUgCUGCg -3'
miRNA:   3'- -CGCUAG--------------UUCCGGGACGcaUGgGACGg -5'
13003 3' -56.8 NC_003387.1 + 37824 0.69 0.42715
Target:  5'- cGCGAUC-GGGCCgaGCGaggucgggcacCCCUGCg -3'
miRNA:   3'- -CGCUAGuUCCGGgaCGCau---------GGGACGg -5'
13003 3' -56.8 NC_003387.1 + 29703 0.69 0.438605
Target:  5'- -aGGUCGAGGCgCUcgGCGgcGCCCagGCCg -3'
miRNA:   3'- cgCUAGUUCCGgGA--CGCa-UGGGa-CGG- -5'
13003 3' -56.8 NC_003387.1 + 35598 0.69 0.458081
Target:  5'- cCGGUCGAGGUCgUcgaGCGUcGCCCccGCCa -3'
miRNA:   3'- cGCUAGUUCCGGgA---CGCA-UGGGa-CGG- -5'
13003 3' -56.8 NC_003387.1 + 48949 0.69 0.458081
Target:  5'- gGCGggCGGGcuGCUCgGCGUACCaCUGCg -3'
miRNA:   3'- -CGCuaGUUC--CGGGaCGCAUGG-GACGg -5'
13003 3' -56.8 NC_003387.1 + 45674 0.69 0.458081
Target:  5'- cCGGUCAGGG-CgaGCGgccgGgCCUGCCg -3'
miRNA:   3'- cGCUAGUUCCgGgaCGCa---UgGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 7132 0.69 0.458081
Target:  5'- uCGAUCAgccacgcgAGGCCCgGCuccucgGCCgUGCCg -3'
miRNA:   3'- cGCUAGU--------UCCGGGaCGca----UGGgACGG- -5'
13003 3' -56.8 NC_003387.1 + 11283 0.68 0.478009
Target:  5'- uCGAUCAAGGCuCUUGCG-ACCg-GCg -3'
miRNA:   3'- cGCUAGUUCCG-GGACGCaUGGgaCGg -5'
13003 3' -56.8 NC_003387.1 + 31006 0.68 0.478009
Target:  5'- -aGGUCAggaucGGGCCgaGCGUGCgCCggggcggcgGCCa -3'
miRNA:   3'- cgCUAGU-----UCCGGgaCGCAUG-GGa--------CGG- -5'
13003 3' -56.8 NC_003387.1 + 48169 0.68 0.479016
Target:  5'- cGCGGUCGcgcaggcgcAGGCCC-GCaagGUGCCCgcaccggcggcggcgGCCg -3'
miRNA:   3'- -CGCUAGU---------UCCGGGaCG---CAUGGGa--------------CGG- -5'
13003 3' -56.8 NC_003387.1 + 15183 0.68 0.488132
Target:  5'- gGUGAUCGacgaggAGGCCC-GC--GCCCgGCCg -3'
miRNA:   3'- -CGCUAGU------UCCGGGaCGcaUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 3967 0.68 0.488132
Target:  5'- cGCGcugCAAGGCUCgGCG-ACCCgcggGUCa -3'
miRNA:   3'- -CGCua-GUUCCGGGaCGCaUGGGa---CGG- -5'
13003 3' -56.8 NC_003387.1 + 32505 0.68 0.488132
Target:  5'- uGCGA-CGAcuGCCgCUGCGUgcacGCCCgGCCg -3'
miRNA:   3'- -CGCUaGUUc-CGG-GACGCA----UGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 6958 0.68 0.488132
Target:  5'- gGCGggCAGGcGCCaCaGCGcGCCCUcgGCCa -3'
miRNA:   3'- -CGCuaGUUC-CGG-GaCGCaUGGGA--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.