miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13005 3' -56.8 NC_003387.1 + 44601 0.69 0.483144
Target:  5'- gAGUcgaGCGACGCcGUCGGg-CCGUgGCg -3'
miRNA:   3'- gUCG---CGCUGCGcUAGCCaaGGCAgCG- -5'
13005 3' -56.8 NC_003387.1 + 383 0.69 0.493183
Target:  5'- gCGGCGaauGAUGCGA-CGGaaCCGaUCGCg -3'
miRNA:   3'- -GUCGCg--CUGCGCUaGCCaaGGC-AGCG- -5'
13005 3' -56.8 NC_003387.1 + 25171 0.69 0.503317
Target:  5'- uCGGCuCGGCGCGGUggcccCGGcgCCGcCGCc -3'
miRNA:   3'- -GUCGcGCUGCGCUA-----GCCaaGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 35885 0.69 0.503317
Target:  5'- -cGCGCGGCGUGAguuUCGGca--GUUGCa -3'
miRNA:   3'- guCGCGCUGCGCU---AGCCaaggCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 21628 0.69 0.503317
Target:  5'- gGGUGCGuCGUGAUCGGaUUCaaaacaGcCGCa -3'
miRNA:   3'- gUCGCGCuGCGCUAGCC-AAGg-----CaGCG- -5'
13005 3' -56.8 NC_003387.1 + 37815 0.68 0.513541
Target:  5'- gCAGCaGCG-CGCGAUCGGg-CCGa-GCg -3'
miRNA:   3'- -GUCG-CGCuGCGCUAGCCaaGGCagCG- -5'
13005 3' -56.8 NC_003387.1 + 12709 0.68 0.513541
Target:  5'- -cGCGCGAgcgccCGCGGggcucuaGGUgCCGUCGUa -3'
miRNA:   3'- guCGCGCU-----GCGCUag-----CCAaGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 12560 0.68 0.513541
Target:  5'- gGGCuCGACGaCGAUCGGgccgCCGacggugUCGCc -3'
miRNA:   3'- gUCGcGCUGC-GCUAGCCaa--GGC------AGCG- -5'
13005 3' -56.8 NC_003387.1 + 22171 0.68 0.534234
Target:  5'- cCGGcCGCGGCgGCGGuccaugUCGGggcgcCCGUUGCa -3'
miRNA:   3'- -GUC-GCGCUG-CGCU------AGCCaa---GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 49166 0.68 0.555215
Target:  5'- cCAGCGCGcAgGCGGUCGcGcaggcggcggCCGUCGa -3'
miRNA:   3'- -GUCGCGC-UgCGCUAGC-Caa--------GGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 29580 0.68 0.555215
Target:  5'- uCGGCGUGACGuCGAUgacaccguugcCGGUgaggGUCGCg -3'
miRNA:   3'- -GUCGCGCUGC-GCUA-----------GCCAagg-CAGCG- -5'
13005 3' -56.8 NC_003387.1 + 46957 0.68 0.555215
Target:  5'- gCGGCGa-GCGCGGcCGGUUCCGcuacaUGCg -3'
miRNA:   3'- -GUCGCgcUGCGCUaGCCAAGGCa----GCG- -5'
13005 3' -56.8 NC_003387.1 + 41079 0.67 0.565797
Target:  5'- uCAGCGCGACGUugaauagccacuGcgCGG--CgGUCGCg -3'
miRNA:   3'- -GUCGCGCUGCG------------CuaGCCaaGgCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 27501 0.67 0.565797
Target:  5'- gCGGCuGUGGCGCGAagaucCGGccgCCGcCGCg -3'
miRNA:   3'- -GUCG-CGCUGCGCUa----GCCaa-GGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 41289 0.67 0.575365
Target:  5'- gCAGCGCGGgcacgagcacCGaCGAcagcaccUCGGggCCGaUCGCg -3'
miRNA:   3'- -GUCGCGCU----------GC-GCU-------AGCCaaGGC-AGCG- -5'
13005 3' -56.8 NC_003387.1 + 20214 0.67 0.57643
Target:  5'- gGGCGUGcACGCag-CGGcagUCGUCGCa -3'
miRNA:   3'- gUCGCGC-UGCGcuaGCCaa-GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 17434 0.67 0.57643
Target:  5'- uCAGUGCGGCGaaCGAUaGGcgCCaGUCGUa -3'
miRNA:   3'- -GUCGCGCUGC--GCUAgCCaaGG-CAGCG- -5'
13005 3' -56.8 NC_003387.1 + 22365 0.67 0.576431
Target:  5'- aGGCGCacccGGCGCagugUGGUUCCG-CGCc -3'
miRNA:   3'- gUCGCG----CUGCGcua-GCCAAGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 43114 0.67 0.576431
Target:  5'- gAGCGCGACG-GcgCGGcgCCG-CGg -3'
miRNA:   3'- gUCGCGCUGCgCuaGCCaaGGCaGCg -5'
13005 3' -56.8 NC_003387.1 + 32235 0.67 0.586039
Target:  5'- gAGCGCGACGagcuggcCGAcCGccuggCCGUCGCc -3'
miRNA:   3'- gUCGCGCUGC-------GCUaGCcaa--GGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.