miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13005 5' -54.4 NC_003387.1 + 12988 0.66 0.768699
Target:  5'- aCCGaCGACGAGCUuaAGGC-GUCGuCGg-- -3'
miRNA:   3'- -GGC-GCUGCUCGG--UCUGaCAGU-GCaaa -5'
13005 5' -54.4 NC_003387.1 + 45836 0.66 0.768699
Target:  5'- cCCGCGACGAcGCCgcggAGAucCUG-CGCGa-- -3'
miRNA:   3'- -GGCGCUGCU-CGG----UCU--GACaGUGCaaa -5'
13005 5' -54.4 NC_003387.1 + 20474 0.66 0.758421
Target:  5'- uCgGCGACG-GCCAGGCgGUCGg---- -3'
miRNA:   3'- -GgCGCUGCuCGGUCUGaCAGUgcaaa -5'
13005 5' -54.4 NC_003387.1 + 47756 0.66 0.752191
Target:  5'- gCUGCG-CGAGCaCGGccugaccggcugguCUGUCACGUUc -3'
miRNA:   3'- -GGCGCuGCUCG-GUCu-------------GACAGUGCAAa -5'
13005 5' -54.4 NC_003387.1 + 17028 0.66 0.726848
Target:  5'- aCCGCGGCGGcugccgcccucGCCGGGC-GUCGuCGa-- -3'
miRNA:   3'- -GGCGCUGCU-----------CGGUCUGaCAGU-GCaaa -5'
13005 5' -54.4 NC_003387.1 + 49590 0.67 0.716115
Target:  5'- gCCgGUGACcuGAGCCGGGCUGaucugCGCGa-- -3'
miRNA:   3'- -GG-CGCUG--CUCGGUCUGACa----GUGCaaa -5'
13005 5' -54.4 NC_003387.1 + 21259 0.67 0.7053
Target:  5'- gCCGCGACGAggaGUCGGGCaagGUgGCGc-- -3'
miRNA:   3'- -GGCGCUGCU---CGGUCUGa--CAgUGCaaa -5'
13005 5' -54.4 NC_003387.1 + 48477 0.67 0.694411
Target:  5'- uUGCGGCGuAGUgAGGCcGUCGCGg-- -3'
miRNA:   3'- gGCGCUGC-UCGgUCUGaCAGUGCaaa -5'
13005 5' -54.4 NC_003387.1 + 20117 0.67 0.683461
Target:  5'- cCCGCGGCGAGCCcgagcaGGAUcgacGUCAgGa-- -3'
miRNA:   3'- -GGCGCUGCUCGG------UCUGa---CAGUgCaaa -5'
13005 5' -54.4 NC_003387.1 + 11694 0.67 0.672461
Target:  5'- gCCGCGGucguCGGGCUc-GCUGUCGCGa-- -3'
miRNA:   3'- -GGCGCU----GCUCGGucUGACAGUGCaaa -5'
13005 5' -54.4 NC_003387.1 + 19340 0.68 0.660317
Target:  5'- gCGCGGCGAgaaccugGCCGGGCggGcUCugGUUg -3'
miRNA:   3'- gGCGCUGCU-------CGGUCUGa-C-AGugCAAa -5'
13005 5' -54.4 NC_003387.1 + 42233 0.68 0.650357
Target:  5'- aCCGCGAUGGGCgAGGUUGUguCGa-- -3'
miRNA:   3'- -GGCGCUGCUCGgUCUGACAguGCaaa -5'
13005 5' -54.4 NC_003387.1 + 25210 0.68 0.650357
Target:  5'- cUCGCGGCGgcGGCCGGAUcuUCGCGc-- -3'
miRNA:   3'- -GGCGCUGC--UCGGUCUGacAGUGCaaa -5'
13005 5' -54.4 NC_003387.1 + 10250 0.68 0.650357
Target:  5'- gCCGCGcCGAGCgCGGGCUcaagGUCGCc--- -3'
miRNA:   3'- -GGCGCuGCUCG-GUCUGA----CAGUGcaaa -5'
13005 5' -54.4 NC_003387.1 + 24776 0.68 0.628184
Target:  5'- aUCGCcACGAGCCGGAaccgcucgggGUCGCGg-- -3'
miRNA:   3'- -GGCGcUGCUCGGUCUga--------CAGUGCaaa -5'
13005 5' -54.4 NC_003387.1 + 21004 0.68 0.628184
Target:  5'- cUCGuCGGCGAcagcGCCGGGCUGUCAa---- -3'
miRNA:   3'- -GGC-GCUGCU----CGGUCUGACAGUgcaaa -5'
13005 5' -54.4 NC_003387.1 + 42111 0.69 0.572981
Target:  5'- aCCGCaagGGUGAGCCGGuGCUcGUCACGUg- -3'
miRNA:   3'- -GGCG---CUGCUCGGUC-UGA-CAGUGCAaa -5'
13005 5' -54.4 NC_003387.1 + 52462 0.7 0.540377
Target:  5'- gCGCGGCGcAGCCAGggcACUG-CACGc-- -3'
miRNA:   3'- gGCGCUGC-UCGGUC---UGACaGUGCaaa -5'
13005 5' -54.4 NC_003387.1 + 49519 0.7 0.518989
Target:  5'- uUCGCGGCGAGCUugcGCUG-CugGUUg -3'
miRNA:   3'- -GGCGCUGCUCGGuc-UGACaGugCAAa -5'
13005 5' -54.4 NC_003387.1 + 6419 0.7 0.50842
Target:  5'- gCCGCGgugacuGCGGGCCAGGCcGUCGagguCGUg- -3'
miRNA:   3'- -GGCGC------UGCUCGGUCUGaCAGU----GCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.