miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13006 5' -54.5 NC_003387.1 + 8306 0.7 0.470044
Target:  5'- gGCagCAUCGCGAGcacaGCGucaGCCGCGGCGAg -3'
miRNA:   3'- -CGa-GUGGCGUUCa---CGU---UGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 49874 0.7 0.479352
Target:  5'- cCUCACCGaCGAucaugucgucggcGUGCGGCCGuUGACGAa -3'
miRNA:   3'- cGAGUGGC-GUU-------------CACGUUGGC-GCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 35463 0.69 0.501412
Target:  5'- aGCgcgCAguCCGCGAG-GUGACCGCGugAGu -3'
miRNA:   3'- -CGa--GU--GGCGUUCaCGUUGGCGCugUU- -5'
13006 5' -54.5 NC_003387.1 + 50172 0.69 0.501412
Target:  5'- cGC-CACCgGCGAGUucauccugcGCGACCGgGACGg -3'
miRNA:   3'- -CGaGUGG-CGUUCA---------CGUUGGCgCUGUu -5'
13006 5' -54.5 NC_003387.1 + 15268 0.69 0.512073
Target:  5'- gGCgcagCGCCGCcAGcaugGCAACCGuCGGCGg -3'
miRNA:   3'- -CGa---GUGGCGuUCa---CGUUGGC-GCUGUu -5'
13006 5' -54.5 NC_003387.1 + 33745 0.69 0.522826
Target:  5'- aGCggCACCccgGCAAGgGCAACgGCGGCGc -3'
miRNA:   3'- -CGa-GUGG---CGUUCaCGUUGgCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 21178 0.69 0.522826
Target:  5'- aGCUUuCCgaggaGCAGGUGCAcgccgugcugGCCGCGugGAa -3'
miRNA:   3'- -CGAGuGG-----CGUUCACGU----------UGGCGCugUU- -5'
13006 5' -54.5 NC_003387.1 + 453 0.69 0.522826
Target:  5'- -gUCGCCGCcgcgGCGGCCGaCGGCGAc -3'
miRNA:   3'- cgAGUGGCGuucaCGUUGGC-GCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 39677 0.69 0.530405
Target:  5'- aGCUCGCgaucgcgaaggcgaCGCAGcgcGUGCAGCaGCGGCAGa -3'
miRNA:   3'- -CGAGUG--------------GCGUU---CACGUUGgCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 30926 0.69 0.533665
Target:  5'- cGCUCGCCGagc-UGCcGCCGCGGuCAAc -3'
miRNA:   3'- -CGAGUGGCguucACGuUGGCGCU-GUU- -5'
13006 5' -54.5 NC_003387.1 + 49785 0.69 0.533665
Target:  5'- --gCGCUGCGGGUugGCGccgaACCGCGACAc -3'
miRNA:   3'- cgaGUGGCGUUCA--CGU----UGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 27682 0.69 0.533665
Target:  5'- aGCUCuggCGCGAGUGCugcGCCGacccCGACAGg -3'
miRNA:   3'- -CGAGug-GCGUUCACGu--UGGC----GCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 42440 0.69 0.543488
Target:  5'- -gUCACCGagcgguucaaggcCGAGUGC-GCCGCGACc- -3'
miRNA:   3'- cgAGUGGC-------------GUUCACGuUGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 44404 0.68 0.555573
Target:  5'- aGCUCGCCGCGGcugacgcuGUGC--UCGCGAUg- -3'
miRNA:   3'- -CGAGUGGCGUU--------CACGuuGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 34708 0.68 0.566626
Target:  5'- cGCUguacaGCCGCGGGUGCuuGugCGCGAa-- -3'
miRNA:   3'- -CGAg----UGGCGUUCACG--UugGCGCUguu -5'
13006 5' -54.5 NC_003387.1 + 15556 0.68 0.566626
Target:  5'- aGCcCGCCGgAGGUGCAGCCGauucGCGc -3'
miRNA:   3'- -CGaGUGGCgUUCACGUUGGCgc--UGUu -5'
13006 5' -54.5 NC_003387.1 + 27920 0.68 0.577734
Target:  5'- aGCUgCugCGcCAGGU-CGGCCGCGACc- -3'
miRNA:   3'- -CGA-GugGC-GUUCAcGUUGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 9573 0.68 0.577734
Target:  5'- -gUCGCCGCcgaacgugcGGUGCAggaacgcccaccACCGCGGCGc -3'
miRNA:   3'- cgAGUGGCGu--------UCACGU------------UGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 23277 0.68 0.58889
Target:  5'- uCUCgAUCGCGAGgauaGCGACCGCG-CGGg -3'
miRNA:   3'- cGAG-UGGCGUUCa---CGUUGGCGCuGUU- -5'
13006 5' -54.5 NC_003387.1 + 4624 0.68 0.58889
Target:  5'- aGC-CACCGCGGGcGCAGCgGCaGCGc -3'
miRNA:   3'- -CGaGUGGCGUUCaCGUUGgCGcUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.