miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13006 5' -54.5 NC_003387.1 + 52498 1.08 0.001096
Target:  5'- gGCUCACCGCAAGUGCAACCGCGACAAg -3'
miRNA:   3'- -CGAGUGGCGUUCACGUUGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 41752 0.77 0.185182
Target:  5'- gGCUgGCCGCGguguGGUGCGACCuCGACGu -3'
miRNA:   3'- -CGAgUGGCGU----UCACGUUGGcGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 28213 0.76 0.19564
Target:  5'- aGCUCG--GCAAGcGCAGCCGCGACGg -3'
miRNA:   3'- -CGAGUggCGUUCaCGUUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 17878 0.76 0.20106
Target:  5'- uCUCACCGCAAGgcccGCGcggGCCGuCGACGAa -3'
miRNA:   3'- cGAGUGGCGUUCa---CGU---UGGC-GCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 16318 0.76 0.206049
Target:  5'- aGCUCGgCGCcGGUGUcgauguuGACCGCGGCGAc -3'
miRNA:   3'- -CGAGUgGCGuUCACG-------UUGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 36458 0.75 0.236376
Target:  5'- aGCUCGCC-CAGGcGCAGCCGaUGGCAAu -3'
miRNA:   3'- -CGAGUGGcGUUCaCGUUGGC-GCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 5412 0.75 0.242745
Target:  5'- --aCGCCGCAAGcguUGCAGCCuGCGGCGu -3'
miRNA:   3'- cgaGUGGCGUUC---ACGUUGG-CGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 33071 0.73 0.314448
Target:  5'- cGCgccaagCGCCGCGAGcGUAACCGCGuCGc -3'
miRNA:   3'- -CGa-----GUGGCGUUCaCGUUGGCGCuGUu -5'
13006 5' -54.5 NC_003387.1 + 24857 0.73 0.314448
Target:  5'- uGCUCgACCGCGccGGUGuCGAUCGUGGCGc -3'
miRNA:   3'- -CGAG-UGGCGU--UCAC-GUUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 351 0.73 0.314448
Target:  5'- gGCUCGCCGCAAacGUGaCAGucuggcucgUCGCGGCGAa -3'
miRNA:   3'- -CGAGUGGCGUU--CAC-GUU---------GGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 1704 0.73 0.33058
Target:  5'- cGCUCugCGCuugcGUGCAuGCCGCGuGCAc -3'
miRNA:   3'- -CGAGugGCGuu--CACGU-UGGCGC-UGUu -5'
13006 5' -54.5 NC_003387.1 + 24911 0.73 0.338872
Target:  5'- --gCACCgGCAAGUGCGuugugaccGCCGCGACc- -3'
miRNA:   3'- cgaGUGG-CGUUCACGU--------UGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 5157 0.72 0.364644
Target:  5'- aGCuUCACCgacacGCGAGUGCGGCCGaCGAgCAc -3'
miRNA:   3'- -CG-AGUGG-----CGUUCACGUUGGC-GCU-GUu -5'
13006 5' -54.5 NC_003387.1 + 6851 0.72 0.364644
Target:  5'- cGCUCgGCCGCGGcGcGCAGCCGCaGCAGc -3'
miRNA:   3'- -CGAG-UGGCGUU-CaCGUUGGCGcUGUU- -5'
13006 5' -54.5 NC_003387.1 + 5843 0.72 0.373531
Target:  5'- gGCUgCGCCGCAGGUGgGGgCGCcGCAAc -3'
miRNA:   3'- -CGA-GUGGCGUUCACgUUgGCGcUGUU- -5'
13006 5' -54.5 NC_003387.1 + 47301 0.71 0.391741
Target:  5'- cGCgaaaCGCCGCAGGcUGCAACgcuUGCGGCGu -3'
miRNA:   3'- -CGa---GUGGCGUUC-ACGUUG---GCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 48788 0.71 0.439708
Target:  5'- aGCUCGCCGC---UGaucGCCGCGGCGg -3'
miRNA:   3'- -CGAGUGGCGuucACgu-UGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 10610 0.7 0.449697
Target:  5'- cGgUCGCCucggucauGCAGGacGCGACCGCGGCGGu -3'
miRNA:   3'- -CgAGUGG--------CGUUCa-CGUUGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 5780 0.7 0.453728
Target:  5'- cGCUCGCCGCGgaucgacaccucGGUGCccggcucaagcgugcGGCCGUGcACGAc -3'
miRNA:   3'- -CGAGUGGCGU------------UCACG---------------UUGGCGC-UGUU- -5'
13006 5' -54.5 NC_003387.1 + 8306 0.7 0.470044
Target:  5'- gGCagCAUCGCGAGcacaGCGucaGCCGCGGCGAg -3'
miRNA:   3'- -CGa-GUGGCGUUCa---CGU---UGGCGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.