miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13006 5' -54.5 NC_003387.1 + 50165 0.66 0.733631
Target:  5'- gGCguaCACgGCGAGgaucuGCCGCGGCGAc -3'
miRNA:   3'- -CGa--GUGgCGUUCacgu-UGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 16144 0.66 0.700877
Target:  5'- uGCUgggCACCGCcccgucgaucccGAGUGUGGuauuCCGCGACAc -3'
miRNA:   3'- -CGA---GUGGCG------------UUCACGUU----GGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 35298 0.66 0.700877
Target:  5'- cGUUCGCCGCAcugaaucgGCAcCUGUGGCAGu -3'
miRNA:   3'- -CGAGUGGCGUuca-----CGUuGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 4082 0.66 0.733631
Target:  5'- gGUUCuGCCGCAugcucGCGAcCCGCGGCGc -3'
miRNA:   3'- -CGAG-UGGCGUuca--CGUU-GGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 39761 0.66 0.677555
Target:  5'- aGCUCGCCGacgcGGUGCGcaagcgcaacgagGCCaGCGGCc- -3'
miRNA:   3'- -CGAGUGGCgu--UCACGU-------------UGG-CGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 14658 0.66 0.678671
Target:  5'- gGCgUUAUCGCGAucGCgAACCGCGGCAc -3'
miRNA:   3'- -CG-AGUGGCGUUcaCG-UUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 30272 0.66 0.689803
Target:  5'- --gUACCGCGAG-GCcaacGCCGCGGCc- -3'
miRNA:   3'- cgaGUGGCGUUCaCGu---UGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 9854 0.66 0.689803
Target:  5'- cCUCGCCGCcGG-GC-ACCGCGGu-- -3'
miRNA:   3'- cGAGUGGCGuUCaCGuUGGCGCUguu -5'
13006 5' -54.5 NC_003387.1 + 40859 0.66 0.689803
Target:  5'- cGCUCACCGaCAcaauGUGgucggauuuCCGCGGCGAc -3'
miRNA:   3'- -CGAGUGGC-GUu---CACguu------GGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 8123 0.66 0.675322
Target:  5'- aGCUCguaCGCGcugcugucccggccGGgcaGCGACCGCGACGu -3'
miRNA:   3'- -CGAGug-GCGU--------------UCa--CGUUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 5124 0.66 0.678671
Target:  5'- gGCgagaACCGCAGcGUGCGACC-CGAUc- -3'
miRNA:   3'- -CGag--UGGCGUU-CACGUUGGcGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 52265 0.66 0.689803
Target:  5'- cGgUCGCCGUcGGccgccGCGGCgGCGACAGa -3'
miRNA:   3'- -CgAGUGGCGuUCa----CGUUGgCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 52076 0.66 0.733631
Target:  5'- gGUUCAUCGgGcGUcGCuGCCGCGGCGg -3'
miRNA:   3'- -CGAGUGGCgUuCA-CGuUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 2 0.66 0.733631
Target:  5'- ---uGCCGCGAGggGCG-CCGCGAUc- -3'
miRNA:   3'- cgagUGGCGUUCa-CGUuGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 15375 0.66 0.722803
Target:  5'- ---uGCCGCAgauAGcGCAGCCcGCGGCGGg -3'
miRNA:   3'- cgagUGGCGU---UCaCGUUGG-CGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 3809 0.66 0.718445
Target:  5'- cGCaCACCGCAAGcGCGACaacgaucgucaggGCGGCGc -3'
miRNA:   3'- -CGaGUGGCGUUCaCGUUGg------------CGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 22152 0.66 0.711881
Target:  5'- aCUCGCgGCAcGGcGCGuaccgGCCGCGGCGg -3'
miRNA:   3'- cGAGUGgCGU-UCaCGU-----UGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 22042 0.66 0.700877
Target:  5'- cGCcC-CCGCcGGUGCGACCGgGuCGGg -3'
miRNA:   3'- -CGaGuGGCGuUCACGUUGGCgCuGUU- -5'
13006 5' -54.5 NC_003387.1 + 25991 0.66 0.689803
Target:  5'- cGCUCGCCG-GGGUcGCGauccagcucgcGCCGCGcACGAc -3'
miRNA:   3'- -CGAGUGGCgUUCA-CGU-----------UGGCGC-UGUU- -5'
13006 5' -54.5 NC_003387.1 + 52582 0.66 0.689803
Target:  5'- aGCUCggcggcgcggAUCGCGAGgGCGACCGCaucgaGGCGGg -3'
miRNA:   3'- -CGAG----------UGGCGUUCaCGUUGGCG-----CUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.