Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13006 | 5' | -54.5 | NC_003387.1 | + | 52498 | 1.08 | 0.001096 |
Target: 5'- gGCUCACCGCAAGUGCAACCGCGACAAg -3' miRNA: 3'- -CGAGUGGCGUUCACGUUGGCGCUGUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 27682 | 0.69 | 0.533665 |
Target: 5'- aGCUCuggCGCGAGUGCugcGCCGacccCGACAGg -3' miRNA: 3'- -CGAGug-GCGUUCACGu--UGGC----GCUGUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 44404 | 0.68 | 0.555573 |
Target: 5'- aGCUCGCCGCGGcugacgcuGUGC--UCGCGAUg- -3' miRNA: 3'- -CGAGUGGCGUU--------CACGuuGGCGCUGuu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 4082 | 0.66 | 0.733631 |
Target: 5'- gGUUCuGCCGCAugcucGCGAcCCGCGGCGc -3' miRNA: 3'- -CGAG-UGGCGUuca--CGUU-GGCGCUGUu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 36458 | 0.75 | 0.236376 |
Target: 5'- aGCUCGCC-CAGGcGCAGCCGaUGGCAAu -3' miRNA: 3'- -CGAGUGGcGUUCaCGUUGGC-GCUGUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 33071 | 0.73 | 0.314448 |
Target: 5'- cGCgccaagCGCCGCGAGcGUAACCGCGuCGc -3' miRNA: 3'- -CGa-----GUGGCGUUCaCGUUGGCGCuGUu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 47301 | 0.71 | 0.391741 |
Target: 5'- cGCgaaaCGCCGCAGGcUGCAACgcuUGCGGCGu -3' miRNA: 3'- -CGa---GUGGCGUUC-ACGUUG---GCGCUGUu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 48788 | 0.71 | 0.439708 |
Target: 5'- aGCUCGCCGC---UGaucGCCGCGGCGg -3' miRNA: 3'- -CGAGUGGCGuucACgu-UGGCGCUGUu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 35463 | 0.69 | 0.501412 |
Target: 5'- aGCgcgCAguCCGCGAG-GUGACCGCGugAGu -3' miRNA: 3'- -CGa--GU--GGCGUUCaCGUUGGCGCugUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 39677 | 0.69 | 0.530405 |
Target: 5'- aGCUCGCgaucgcgaaggcgaCGCAGcgcGUGCAGCaGCGGCAGa -3' miRNA: 3'- -CGAGUG--------------GCGUU---CACGUUGgCGCUGUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 33745 | 0.69 | 0.522826 |
Target: 5'- aGCggCACCccgGCAAGgGCAACgGCGGCGc -3' miRNA: 3'- -CGa-GUGG---CGUUCaCGUUGgCGCUGUu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 16561 | 0.7 | 0.470044 |
Target: 5'- cGUUCAaggUGCAGGUGCGcaACgGCGGCAAc -3' miRNA: 3'- -CGAGUg--GCGUUCACGU--UGgCGCUGUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 41752 | 0.77 | 0.185182 |
Target: 5'- gGCUgGCCGCGguguGGUGCGACCuCGACGu -3' miRNA: 3'- -CGAgUGGCGU----UCACGUUGGcGCUGUu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 21178 | 0.69 | 0.522826 |
Target: 5'- aGCUUuCCgaggaGCAGGUGCAcgccgugcugGCCGCGugGAa -3' miRNA: 3'- -CGAGuGG-----CGUUCACGU----------UGGCGCugUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 28213 | 0.76 | 0.19564 |
Target: 5'- aGCUCG--GCAAGcGCAGCCGCGACGg -3' miRNA: 3'- -CGAGUggCGUUCaCGUUGGCGCUGUu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 10610 | 0.7 | 0.449697 |
Target: 5'- cGgUCGCCucggucauGCAGGacGCGACCGCGGCGGu -3' miRNA: 3'- -CgAGUGG--------CGUUCa-CGUUGGCGCUGUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 453 | 0.69 | 0.522826 |
Target: 5'- -gUCGCCGCcgcgGCGGCCGaCGGCGAc -3' miRNA: 3'- cgAGUGGCGuucaCGUUGGC-GCUGUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 42440 | 0.69 | 0.543488 |
Target: 5'- -gUCACCGagcgguucaaggcCGAGUGC-GCCGCGACc- -3' miRNA: 3'- cgAGUGGC-------------GUUCACGuUGGCGCUGuu -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 17878 | 0.76 | 0.20106 |
Target: 5'- uCUCACCGCAAGgcccGCGcggGCCGuCGACGAa -3' miRNA: 3'- cGAGUGGCGUUCa---CGU---UGGC-GCUGUU- -5' |
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13006 | 5' | -54.5 | NC_003387.1 | + | 24911 | 0.73 | 0.338872 |
Target: 5'- --gCACCgGCAAGUGCGuugugaccGCCGCGACc- -3' miRNA: 3'- cgaGUGG-CGUUCACGU--------UGGCGCUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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