miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13006 5' -54.5 NC_003387.1 + 2 0.66 0.733631
Target:  5'- ---uGCCGCGAGggGCG-CCGCGAUc- -3'
miRNA:   3'- cgagUGGCGUUCa-CGUuGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 351 0.73 0.314448
Target:  5'- gGCUCGCCGCAAacGUGaCAGucuggcucgUCGCGGCGAa -3'
miRNA:   3'- -CGAGUGGCGUU--CAC-GUU---------GGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 453 0.69 0.522826
Target:  5'- -gUCGCCGCcgcgGCGGCCGaCGGCGAc -3'
miRNA:   3'- cgAGUGGCGuucaCGUUGGC-GCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 611 0.68 0.611306
Target:  5'- cGCUCagGCCgaGCAGGgcgaggGCAgcgucgccGCCGCGGCAGc -3'
miRNA:   3'- -CGAG--UGG--CGUUCa-----CGU--------UGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 1142 0.67 0.633797
Target:  5'- uGCUCGgCGCcugcGUGCAugCGCGGu-- -3'
miRNA:   3'- -CGAGUgGCGuu--CACGUugGCGCUguu -5'
13006 5' -54.5 NC_003387.1 + 1704 0.73 0.33058
Target:  5'- cGCUCugCGCuugcGUGCAuGCCGCGuGCAc -3'
miRNA:   3'- -CGAGugGCGuu--CACGU-UGGCGC-UGUu -5'
13006 5' -54.5 NC_003387.1 + 2900 0.68 0.611306
Target:  5'- cGCUCGCCGgGcGcgGCAgGCCGCgGGCGAg -3'
miRNA:   3'- -CGAGUGGCgUuCa-CGU-UGGCG-CUGUU- -5'
13006 5' -54.5 NC_003387.1 + 3809 0.66 0.718445
Target:  5'- cGCaCACCGCAAGcGCGACaacgaucgucaggGCGGCGc -3'
miRNA:   3'- -CGaGUGGCGUUCaCGUUGg------------CGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 4082 0.66 0.733631
Target:  5'- gGUUCuGCCGCAugcucGCGAcCCGCGGCGc -3'
miRNA:   3'- -CGAG-UGGCGUuca--CGUU-GGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 4624 0.68 0.58889
Target:  5'- aGC-CACCGCGGGcGCAGCgGCaGCGc -3'
miRNA:   3'- -CGaGUGGCGUUCaCGUUGgCGcUGUu -5'
13006 5' -54.5 NC_003387.1 + 5124 0.66 0.678671
Target:  5'- gGCgagaACCGCAGcGUGCGACC-CGAUc- -3'
miRNA:   3'- -CGag--UGGCGUU-CACGUUGGcGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 5157 0.72 0.364644
Target:  5'- aGCuUCACCgacacGCGAGUGCGGCCGaCGAgCAc -3'
miRNA:   3'- -CG-AGUGG-----CGUUCACGUUGGC-GCU-GUu -5'
13006 5' -54.5 NC_003387.1 + 5412 0.75 0.242745
Target:  5'- --aCGCCGCAAGcguUGCAGCCuGCGGCGu -3'
miRNA:   3'- cgaGUGGCGUUC---ACGUUGG-CGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 5570 0.67 0.645045
Target:  5'- gGCUgaCGCCGcCGAGcugGCAAagauCCGCGACGg -3'
miRNA:   3'- -CGA--GUGGC-GUUCa--CGUU----GGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 5780 0.7 0.453728
Target:  5'- cGCUCGCCGCGgaucgacaccucGGUGCccggcucaagcgugcGGCCGUGcACGAc -3'
miRNA:   3'- -CGAGUGGCGU------------UCACG---------------UUGGCGC-UGUU- -5'
13006 5' -54.5 NC_003387.1 + 5843 0.72 0.373531
Target:  5'- gGCUgCGCCGCAGGUGgGGgCGCcGCAAc -3'
miRNA:   3'- -CGA-GUGGCGUUCACgUUgGCGcUGUU- -5'
13006 5' -54.5 NC_003387.1 + 6851 0.72 0.364644
Target:  5'- cGCUCgGCCGCGGcGcGCAGCCGCaGCAGc -3'
miRNA:   3'- -CGAG-UGGCGUU-CaCGUUGGCGcUGUU- -5'
13006 5' -54.5 NC_003387.1 + 8123 0.66 0.675322
Target:  5'- aGCUCguaCGCGcugcugucccggccGGgcaGCGACCGCGACGu -3'
miRNA:   3'- -CGAGug-GCGU--------------UCa--CGUUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 8269 0.68 0.611306
Target:  5'- --cCACCGCAAgGUGCAcacGCCcgaggGCGACGu -3'
miRNA:   3'- cgaGUGGCGUU-CACGU---UGG-----CGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 8306 0.7 0.470044
Target:  5'- gGCagCAUCGCGAGcacaGCGucaGCCGCGGCGAg -3'
miRNA:   3'- -CGa-GUGGCGUUCa---CGU---UGGCGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.