Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13007 | 5' | -56.5 | NC_003387.1 | + | 18987 | 0.68 | 0.4927 |
Target: 5'- uGCcGGGGuGcCGcuuagacggGGCCAGCGAGCuaaGCCa -3' miRNA: 3'- -CGuCCCCuCaGC---------UCGGUCGUUUG---CGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 8997 | 0.67 | 0.566441 |
Target: 5'- cGCGGGcucccgcaugccGccGUCGAGCaccuGGCGGGCGCCg -3' miRNA: 3'- -CGUCC------------CcuCAGCUCGg---UCGUUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 28090 | 0.67 | 0.566441 |
Target: 5'- aGCAGGGcGAggugcGUCGGGUCGccCAGGCGCg -3' miRNA: 3'- -CGUCCC-CU-----CAGCUCGGUc-GUUUGCGg -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 26403 | 0.67 | 0.555692 |
Target: 5'- cCAGGGu-GUCGuugaacacAGCCAGCAcGACaGCCa -3' miRNA: 3'- cGUCCCcuCAGC--------UCGGUCGU-UUG-CGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 44876 | 0.67 | 0.55462 |
Target: 5'- uCGGGGGcGUCGGcgauuccGCCuGC--GCGCCg -3' miRNA: 3'- cGUCCCCuCAGCU-------CGGuCGuuUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 18107 | 0.67 | 0.545003 |
Target: 5'- cGCAGGuaGG-CGGccauGCCGGUGAAUGCCg -3' miRNA: 3'- -CGUCCccUCaGCU----CGGUCGUUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 48824 | 0.68 | 0.513367 |
Target: 5'- cCAGGcGGucagGGUCGGG-CAGC-GGCGCCg -3' miRNA: 3'- cGUCC-CC----UCAGCUCgGUCGuUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 51081 | 0.68 | 0.513367 |
Target: 5'- cGUGGcGGccGUCGucguccaucAGCCAGCAcGCGCCg -3' miRNA: 3'- -CGUC-CCcuCAGC---------UCGGUCGUuUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 39289 | 0.68 | 0.4927 |
Target: 5'- aGCAGGuu-GcCGAGguaguucacaCCGGCGAGCGCCg -3' miRNA: 3'- -CGUCCccuCaGCUC----------GGUCGUUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 49074 | 0.67 | 0.577242 |
Target: 5'- aGCcGGGGca-CGAGCCGGUcGACGgCg -3' miRNA: 3'- -CGuCCCCucaGCUCGGUCGuUUGCgG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 7405 | 0.67 | 0.577242 |
Target: 5'- cGCGGccGGGUCuuGCUGGCAAACGUCc -3' miRNA: 3'- -CGUCccCUCAGcuCGGUCGUUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 1390 | 0.67 | 0.588089 |
Target: 5'- aGCGGGucGGGGUCGcGCUcgaAGUugugcgAGGCGCCg -3' miRNA: 3'- -CGUCC--CCUCAGCuCGG---UCG------UUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 34947 | 0.66 | 0.664533 |
Target: 5'- aCAuGGGGA-UCGuuUCGGCcGACGCCg -3' miRNA: 3'- cGU-CCCCUcAGCucGGUCGuUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 16061 | 0.66 | 0.664533 |
Target: 5'- cCAGGucGG-CGAGCCGGU-GAUGCCa -3' miRNA: 3'- cGUCCccUCaGCUCGGUCGuUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 6955 | 0.66 | 0.65799 |
Target: 5'- aGCGGcGGGcAGgCGccacagcgcgcccucGGCCAcuuguGCAGGCGCCg -3' miRNA: 3'- -CGUC-CCC-UCaGC---------------UCGGU-----CGUUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 12292 | 0.66 | 0.653622 |
Target: 5'- uCAGGccGGGcCGGGCCGGUu--CGCCg -3' miRNA: 3'- cGUCCc-CUCaGCUCGGUCGuuuGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 4133 | 0.66 | 0.620813 |
Target: 5'- aGCGGcGGGcuuuugGGUCG-GCgaGGCGGGCGUCg -3' miRNA: 3'- -CGUC-CCC------UCAGCuCGg-UCGUUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 23566 | 0.66 | 0.609883 |
Target: 5'- -------cGUCGGGUCGGCGAAUGCCg -3' miRNA: 3'- cguccccuCAGCUCGGUCGUUUGCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 2205 | 0.67 | 0.603333 |
Target: 5'- uCAGGGGugccucgugcucgccGGUCaggcGGCCAGCGucaGCCa -3' miRNA: 3'- cGUCCCC---------------UCAGc---UCGGUCGUuugCGG- -5' |
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13007 | 5' | -56.5 | NC_003387.1 | + | 26565 | 0.67 | 0.598972 |
Target: 5'- uCGGGGGuugacuccucggGGUCaGGCCGcGCGAGCGgCg -3' miRNA: 3'- cGUCCCC------------UCAGcUCGGU-CGUUUGCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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