miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 5' -56.5 NC_003387.1 + 28090 0.67 0.566441
Target:  5'- aGCAGGGcGAggugcGUCGGGUCGccCAGGCGCg -3'
miRNA:   3'- -CGUCCC-CU-----CAGCUCGGUc-GUUUGCGg -5'
13007 5' -56.5 NC_003387.1 + 26403 0.67 0.555692
Target:  5'- cCAGGGu-GUCGuugaacacAGCCAGCAcGACaGCCa -3'
miRNA:   3'- cGUCCCcuCAGC--------UCGGUCGU-UUG-CGG- -5'
13007 5' -56.5 NC_003387.1 + 44876 0.67 0.55462
Target:  5'- uCGGGGGcGUCGGcgauuccGCCuGC--GCGCCg -3'
miRNA:   3'- cGUCCCCuCAGCU-------CGGuCGuuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 18107 0.67 0.545003
Target:  5'- cGCAGGuaGG-CGGccauGCCGGUGAAUGCCg -3'
miRNA:   3'- -CGUCCccUCaGCU----CGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 31031 0.68 0.522784
Target:  5'- nCGGGGcGG-CG-GCCAGCAcggcaccGGCGCCg -3'
miRNA:   3'- cGUCCCcUCaGCuCGGUCGU-------UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 48824 0.68 0.513367
Target:  5'- cCAGGcGGucagGGUCGGG-CAGC-GGCGCCg -3'
miRNA:   3'- cGUCC-CC----UCAGCUCgGUCGuUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 51081 0.68 0.513367
Target:  5'- cGUGGcGGccGUCGucguccaucAGCCAGCAcGCGCCg -3'
miRNA:   3'- -CGUC-CCcuCAGC---------UCGGUCGUuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 39223 0.68 0.4927
Target:  5'- gGCAGuGGGAG-CGGGuaCCGGCGccgggcGAgGCCg -3'
miRNA:   3'- -CGUC-CCCUCaGCUC--GGUCGU------UUgCGG- -5'
13007 5' -56.5 NC_003387.1 + 39289 0.68 0.4927
Target:  5'- aGCAGGuu-GcCGAGguaguucacaCCGGCGAGCGCCg -3'
miRNA:   3'- -CGUCCccuCaGCUC----------GGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 18987 0.68 0.4927
Target:  5'- uGCcGGGGuGcCGcuuagacggGGCCAGCGAGCuaaGCCa -3'
miRNA:   3'- -CGuCCCCuCaGC---------UCGGUCGUUUG---CGG- -5'
13007 5' -56.5 NC_003387.1 + 9397 0.69 0.486574
Target:  5'- gGCGGGcaagacgaucgccgaGGAGU-GGGCCGacgaguacgacGCGGGCGCCg -3'
miRNA:   3'- -CGUCC---------------CCUCAgCUCGGU-----------CGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25025 0.69 0.48251
Target:  5'- aGCGGccugucGGGGUCG-GCgCAGCAcucGCGCCa -3'
miRNA:   3'- -CGUCc-----CCUCAGCuCG-GUCGUu--UGCGG- -5'
13007 5' -56.5 NC_003387.1 + 4277 0.69 0.48251
Target:  5'- cGCGGGcgauGGAGgccgCGGGCgAGCA-GCGCa -3'
miRNA:   3'- -CGUCC----CCUCa---GCUCGgUCGUuUGCGg -5'
13007 5' -56.5 NC_003387.1 + 622 0.69 0.442825
Target:  5'- aGCAGGGcGAGggcagCGucgccGCCgcGGCAgcGACGCCc -3'
miRNA:   3'- -CGUCCC-CUCa----GCu----CGG--UCGU--UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 41315 0.69 0.433193
Target:  5'- aGCAccucGGGGccgaUCGcGGCCAGCGuGGCGCCg -3'
miRNA:   3'- -CGU----CCCCuc--AGC-UCGGUCGU-UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 20967 0.69 0.433193
Target:  5'- gGCAGGGG---CGGGCaacgccGCGAAUGCCg -3'
miRNA:   3'- -CGUCCCCucaGCUCGgu----CGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 48258 0.69 0.430327
Target:  5'- cGCGGcGGGcucggcGGUCGgcucGGCCuucggcgcgggcucGGCGAACGCCu -3'
miRNA:   3'- -CGUC-CCC------UCAGC----UCGG--------------UCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 19841 0.7 0.414301
Target:  5'- gGCAGGuGuugucGUCGAGCUGGCAGucgGCGCa -3'
miRNA:   3'- -CGUCCcCu----CAGCUCGGUCGUU---UGCGg -5'
13007 5' -56.5 NC_003387.1 + 25995 0.7 0.395925
Target:  5'- cGCcGGGGucgCGAuCCAGCucGCGCCg -3'
miRNA:   3'- -CGuCCCCucaGCUcGGUCGuuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 25298 0.7 0.386936
Target:  5'- cCAGGGcGAcGUCGGcgcggugguGCCAGCGcGCGUCg -3'
miRNA:   3'- cGUCCC-CU-CAGCU---------CGGUCGUuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.