miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13035 5' -54.6 NC_003390.1 + 28420 1.1 0.00062
Target:  5'- uUUCACCAUCAGCAACCACCAAGCCCCa -3'
miRNA:   3'- -AAGUGGUAGUCGUUGGUGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 4357 0.76 0.191666
Target:  5'- aUCACCGUCAGCuuCC-UCAauAGCCCUa -3'
miRNA:   3'- aAGUGGUAGUCGuuGGuGGU--UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 1035 0.75 0.222288
Target:  5'- aUCAUCAUgAGCAuCUACCAggacuauaggcagaaGGCCCCa -3'
miRNA:   3'- aAGUGGUAgUCGUuGGUGGU---------------UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 31565 0.74 0.258343
Target:  5'- -cCACCAUCuacCAACUGCCAguccacugGGCCCCa -3'
miRNA:   3'- aaGUGGUAGuc-GUUGGUGGU--------UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 37941 0.72 0.33437
Target:  5'- -gCGCCAUCAGC-GCCAUC-AGCaCCUg -3'
miRNA:   3'- aaGUGGUAGUCGuUGGUGGuUCG-GGG- -5'
13035 5' -54.6 NC_003390.1 + 33197 0.72 0.33437
Target:  5'- aUCAUCAUCaccgGGgAGCCACCAuuCCCCc -3'
miRNA:   3'- aAGUGGUAG----UCgUUGGUGGUucGGGG- -5'
13035 5' -54.6 NC_003390.1 + 21659 0.72 0.342814
Target:  5'- -aUACUuUUGGCAGCCACCAcuuGGCUCCc -3'
miRNA:   3'- aaGUGGuAGUCGUUGGUGGU---UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 38004 0.71 0.348816
Target:  5'- -gCcCCAUCAGCAccgucguuaccuggAUCACCuuuuAGCCCCu -3'
miRNA:   3'- aaGuGGUAGUCGU--------------UGGUGGu---UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 47150 0.71 0.36906
Target:  5'- aUgAUC-UCAGCAGgCACCAgaccAGCCCCu -3'
miRNA:   3'- aAgUGGuAGUCGUUgGUGGU----UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 38500 0.71 0.378109
Target:  5'- -gCACCGUCAGCu-CCAggAGGUCCCu -3'
miRNA:   3'- aaGUGGUAGUCGuuGGUggUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 2404 0.7 0.405182
Target:  5'- gUCACUAaCGGCuuCCACCAcuccaccGGCaCCCg -3'
miRNA:   3'- aAGUGGUaGUCGuuGGUGGU-------UCG-GGG- -5'
13035 5' -54.6 NC_003390.1 + 40888 0.7 0.44446
Target:  5'- -cCACCAUCccaAGCAacACCACCAauguuggagagacGGCCUUa -3'
miRNA:   3'- aaGUGGUAG---UCGU--UGGUGGU-------------UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 10093 0.7 0.445468
Target:  5'- cUCuCCAUaucCGGCAuugGCgGCCAGGCCCUc -3'
miRNA:   3'- aAGuGGUA---GUCGU---UGgUGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 31121 0.69 0.454609
Target:  5'- aUCACCAUCAuGC-GCCACCAcuGCaucaugaCCCa -3'
miRNA:   3'- aAGUGGUAGU-CGuUGGUGGUu-CG-------GGG- -5'
13035 5' -54.6 NC_003390.1 + 38151 0.69 0.46385
Target:  5'- -gCACCAUCGGCcccuggaaggcCCugUggGCCCUg -3'
miRNA:   3'- aaGUGGUAGUCGuu---------GGugGuuCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 1673 0.69 0.465916
Target:  5'- --aACCucuUCGGguACguagCACCGGGCCCCa -3'
miRNA:   3'- aagUGGu--AGUCguUG----GUGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 23159 0.69 0.475276
Target:  5'- --uGCCAUCAGCAguaccucuggaGCCAuucuguuugguaaUCAAGCCCa -3'
miRNA:   3'- aagUGGUAGUCGU-----------UGGU-------------GGUUCGGGg -5'
13035 5' -54.6 NC_003390.1 + 44272 0.69 0.476321
Target:  5'- cUUCuCCAUgCAGCAca-ACCAGGUCCCa -3'
miRNA:   3'- -AAGuGGUA-GUCGUuggUGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 24216 0.69 0.48684
Target:  5'- -gUACCAUaacCAGCAGCaccaauggugACCAGGCCCUc -3'
miRNA:   3'- aaGUGGUA---GUCGUUGg---------UGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 37825 0.69 0.508199
Target:  5'- -gCcCCAUCAGC-ACCGUC-AGCCCCu -3'
miRNA:   3'- aaGuGGUAGUCGuUGGUGGuUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.