Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13035 | 5' | -54.6 | NC_003390.1 | + | 688 | 0.67 | 0.611641 |
Target: 5'- gUCACCGUugucgaucgacgcCGGCAucccccacagucucaGCUACUggGCUCCa -3' miRNA: 3'- aAGUGGUA-------------GUCGU---------------UGGUGGuuCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 1035 | 0.75 | 0.222288 |
Target: 5'- aUCAUCAUgAGCAuCUACCAggacuauaggcagaaGGCCCCa -3' miRNA: 3'- aAGUGGUAgUCGUuGGUGGU---------------UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 1673 | 0.69 | 0.465916 |
Target: 5'- --aACCucuUCGGguACguagCACCGGGCCCCa -3' miRNA: 3'- aagUGGu--AGUCguUG----GUGGUUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 2208 | 0.67 | 0.596912 |
Target: 5'- --aGCCAugugcUCAGCGAUCACCccuguGGCCUg -3' miRNA: 3'- aagUGGU-----AGUCGUUGGUGGu----UCGGGg -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 2404 | 0.7 | 0.405182 |
Target: 5'- gUCACUAaCGGCuuCCACCAcuccaccGGCaCCCg -3' miRNA: 3'- aAGUGGUaGUCGuuGGUGGU-------UCG-GGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 4357 | 0.76 | 0.191666 |
Target: 5'- aUCACCGUCAGCuuCC-UCAauAGCCCUa -3' miRNA: 3'- aAGUGGUAGUCGuuGGuGGU--UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 5706 | 0.69 | 0.508199 |
Target: 5'- -aCGCUcgCAGCcaGACUGCCcguGCCCCu -3' miRNA: 3'- aaGUGGuaGUCG--UUGGUGGuu-CGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 5927 | 0.66 | 0.663857 |
Target: 5'- -aCGCCAUCaauGGCAACCAUCAcaccgucagugggAGCUUg -3' miRNA: 3'- aaGUGGUAG---UCGUUGGUGGU-------------UCGGGg -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 6118 | 0.66 | 0.692024 |
Target: 5'- -aCGCCAUUAGCGGCCugCucauacagacgcaugAAGUUCUc -3' miRNA: 3'- aaGUGGUAGUCGUUGGugG---------------UUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 6851 | 0.67 | 0.630946 |
Target: 5'- cUCAgCAUCuGUAGCCuuGCCugcacGGGCCCUg -3' miRNA: 3'- aAGUgGUAGuCGUUGG--UGG-----UUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 8859 | 0.67 | 0.585617 |
Target: 5'- aUCugCcgUGGCccCUACaCAGGCCCCa -3' miRNA: 3'- aAGugGuaGUCGuuGGUG-GUUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 10093 | 0.7 | 0.445468 |
Target: 5'- cUCuCCAUaucCGGCAuugGCgGCCAGGCCCUc -3' miRNA: 3'- aAGuGGUA---GUCGU---UGgUGGUUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 10446 | 0.66 | 0.661592 |
Target: 5'- -aCGCCGUCGaucgugacgacuacGCAuCCGCCGAGgCUCu -3' miRNA: 3'- aaGUGGUAGU--------------CGUuGGUGGUUCgGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 10696 | 0.67 | 0.585617 |
Target: 5'- cUCGCUAcCGGCAcuccuaCACCcgagGAGCCCCu -3' miRNA: 3'- aAGUGGUaGUCGUug----GUGG----UUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 10818 | 0.66 | 0.686415 |
Target: 5'- -cCACCAUCAucaauggcugaucGCAACCGCUAcguuuucgaAGCaaCCCu -3' miRNA: 3'- aaGUGGUAGU-------------CGUUGGUGGU---------UCG--GGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 11126 | 0.67 | 0.608238 |
Target: 5'- cUUCGCUGU-AGCuguacuUCACCAGGCCCUc -3' miRNA: 3'- -AAGUGGUAgUCGuu----GGUGGUUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 11311 | 0.68 | 0.563162 |
Target: 5'- -cCGCCAucuUCGGC-ACCACCuccGGCUUCa -3' miRNA: 3'- aaGUGGU---AGUCGuUGGUGGu--UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 17064 | 0.67 | 0.574364 |
Target: 5'- cUCACCcUCuuucGCAACCACCuacuugcuaagaGGGCCUa -3' miRNA: 3'- aAGUGGuAGu---CGUUGGUGG------------UUCGGGg -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 19242 | 0.67 | 0.619586 |
Target: 5'- --gACCAcCAGCGgaGCCACUcAGCaCCCc -3' miRNA: 3'- aagUGGUaGUCGU--UGGUGGuUCG-GGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 20975 | 0.66 | 0.653658 |
Target: 5'- aUCugCAUCAGCGuuaGCaCGCUguguggAAGCCaCCu -3' miRNA: 3'- aAGugGUAGUCGU---UG-GUGG------UUCGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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