Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13035 | 5' | -54.6 | NC_003390.1 | + | 29135 | 0.66 | 0.642307 |
Target: 5'- aUUGCCAgggagUCGGCAAguacCCACCcugcacauGCCCCu -3' miRNA: 3'- aAGUGGU-----AGUCGUU----GGUGGuu------CGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 37825 | 0.69 | 0.508199 |
Target: 5'- -gCcCCAUCAGC-ACCGUC-AGCCCCu -3' miRNA: 3'- aaGuGGUAGUCGuUGGUGGuUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 34315 | 0.68 | 0.552019 |
Target: 5'- --aGCCGUCugAGCGGCUugUAGGgCCCu -3' miRNA: 3'- aagUGGUAG--UCGUUGGugGUUCgGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 11311 | 0.68 | 0.563162 |
Target: 5'- -cCGCCAucuUCGGC-ACCACCuccGGCUUCa -3' miRNA: 3'- aaGUGGU---AGUCGuUGGUGGu--UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 17064 | 0.67 | 0.574364 |
Target: 5'- cUCACCcUCuuucGCAACCACCuacuugcuaagaGGGCCUa -3' miRNA: 3'- aAGUGGuAGu---CGUUGGUGG------------UUCGGGg -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 10696 | 0.67 | 0.585617 |
Target: 5'- cUCGCUAcCGGCAcuccuaCACCcgagGAGCCCCu -3' miRNA: 3'- aAGUGGUaGUCGUug----GUGG----UUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 45269 | 0.67 | 0.598043 |
Target: 5'- cUUACCAcCAGCuccuccgaagaagaAGCCACCAcuaccugagggguccAGCUCCa -3' miRNA: 3'- aAGUGGUaGUCG--------------UUGGUGGU---------------UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 688 | 0.67 | 0.611641 |
Target: 5'- gUCACCGUugucgaucgacgcCGGCAucccccacagucucaGCUACUggGCUCCa -3' miRNA: 3'- aAGUGGUA-------------GUCGU---------------UGGUGGuuCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 6851 | 0.67 | 0.630946 |
Target: 5'- cUCAgCAUCuGUAGCCuuGCCugcacGGGCCCUg -3' miRNA: 3'- aAGUgGUAGuCGUUGG--UGG-----UUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 24216 | 0.69 | 0.48684 |
Target: 5'- -gUACCAUaacCAGCAGCaccaauggugACCAGGCCCUc -3' miRNA: 3'- aaGUGGUA---GUCGUUGg---------UGGUUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 1673 | 0.69 | 0.465916 |
Target: 5'- --aACCucuUCGGguACguagCACCGGGCCCCa -3' miRNA: 3'- aagUGGu--AGUCguUG----GUGGUUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 38151 | 0.69 | 0.46385 |
Target: 5'- -gCACCAUCGGCcccuggaaggcCCugUggGCCCUg -3' miRNA: 3'- aaGUGGUAGUCGuu---------GGugGuuCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 1035 | 0.75 | 0.222288 |
Target: 5'- aUCAUCAUgAGCAuCUACCAggacuauaggcagaaGGCCCCa -3' miRNA: 3'- aAGUGGUAgUCGUuGGUGGU---------------UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 37941 | 0.72 | 0.33437 |
Target: 5'- -gCGCCAUCAGC-GCCAUC-AGCaCCUg -3' miRNA: 3'- aaGUGGUAGUCGuUGGUGGuUCG-GGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 21659 | 0.72 | 0.342814 |
Target: 5'- -aUACUuUUGGCAGCCACCAcuuGGCUCCc -3' miRNA: 3'- aaGUGGuAGUCGUUGGUGGU---UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 38004 | 0.71 | 0.348816 |
Target: 5'- -gCcCCAUCAGCAccgucguuaccuggAUCACCuuuuAGCCCCu -3' miRNA: 3'- aaGuGGUAGUCGU--------------UGGUGGu---UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 47150 | 0.71 | 0.36906 |
Target: 5'- aUgAUC-UCAGCAGgCACCAgaccAGCCCCu -3' miRNA: 3'- aAgUGGuAGUCGUUgGUGGU----UCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 38500 | 0.71 | 0.378109 |
Target: 5'- -gCACCGUCAGCu-CCAggAGGUCCCu -3' miRNA: 3'- aaGUGGUAGUCGuuGGUggUUCGGGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 2404 | 0.7 | 0.405182 |
Target: 5'- gUCACUAaCGGCuuCCACCAcuccaccGGCaCCCg -3' miRNA: 3'- aAGUGGUaGUCGuuGGUGGU-------UCG-GGG- -5' |
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13035 | 5' | -54.6 | NC_003390.1 | + | 40888 | 0.7 | 0.44446 |
Target: 5'- -cCACCAUCccaAGCAacACCACCAauguuggagagacGGCCUUa -3' miRNA: 3'- aaGUGGUAG---UCGU--UGGUGGU-------------UCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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