miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13091 3' -60.2 NC_003401.1 + 132957 1.11 0.000623
Target:  5'- cCAGCGAGCAGGCAGGCAGCCGUACCCg -3'
miRNA:   3'- -GUCGCUCGUCCGUCCGUCGGCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 222 1.11 0.000623
Target:  5'- cCAGCGAGCAGGCAGGCAGCCGUACCCg -3'
miRNA:   3'- -GUCGCUCGUCCGUCCGUCGGCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 116524 0.74 0.243592
Target:  5'- cCAG-GAGCcuuGGCAGGCAGUCGcACCUc -3'
miRNA:   3'- -GUCgCUCGu--CCGUCCGUCGGCaUGGG- -5'
13091 3' -60.2 NC_003401.1 + 57741 0.74 0.276654
Target:  5'- gCGGCGAGCGGGUauaccuGGGCGGCCauugauaaaacaacaGUAUUCa -3'
miRNA:   3'- -GUCGCUCGUCCG------UCCGUCGG---------------CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 121925 0.73 0.278592
Target:  5'- gAGCGGGgGGcGCGGGUgcggcggcuggcgcGGCCGUGCCa -3'
miRNA:   3'- gUCGCUCgUC-CGUCCG--------------UCGGCAUGGg -5'
13091 3' -60.2 NC_003401.1 + 132517 0.73 0.293811
Target:  5'- gGGCGGccGgGGGC-GGCGGCCGcggGCCCg -3'
miRNA:   3'- gUCGCU--CgUCCGuCCGUCGGCa--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 262 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 133061 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 326 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 132997 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 84046 0.72 0.351746
Target:  5'- -cGUGGGCaaggGGGCGGGCAGCgGcauuCCCg -3'
miRNA:   3'- guCGCUCG----UCCGUCCGUCGgCau--GGG- -5'
13091 3' -60.2 NC_003401.1 + 54848 0.71 0.367441
Target:  5'- uGGUGaAGCAGGCgaccgaauucuGGGCGGCUaGUGCUCg -3'
miRNA:   3'- gUCGC-UCGUCCG-----------UCCGUCGG-CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 16885 0.7 0.426042
Target:  5'- uGGCGAGCAGGUgcgAGG-AGCUGc-CCCa -3'
miRNA:   3'- gUCGCUCGUCCG---UCCgUCGGCauGGG- -5'
13091 3' -60.2 NC_003401.1 + 132558 0.7 0.426042
Target:  5'- gCGGCGcGC-GGCucccgaugccGGGCGGCCGccGCCCg -3'
miRNA:   3'- -GUCGCuCGuCCG----------UCCGUCGGCa-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 18171 0.7 0.434858
Target:  5'- gGGUGGGCAGGaCGGGU--CCGgacugGCCCa -3'
miRNA:   3'- gUCGCUCGUCC-GUCCGucGGCa----UGGG- -5'
13091 3' -60.2 NC_003401.1 + 105485 0.7 0.443779
Target:  5'- -cGCaaGGcCAGGguGGCGGCCGUcACCUg -3'
miRNA:   3'- guCGc-UC-GUCCguCCGUCGGCA-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 119810 0.7 0.456439
Target:  5'- gCAGCGgcaccgaggcuaaacAGCGcGCAGGCGGCCGccACCa -3'
miRNA:   3'- -GUCGC---------------UCGUcCGUCCGUCGGCa-UGGg -5'
13091 3' -60.2 NC_003401.1 + 133548 0.69 0.471141
Target:  5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3'
miRNA:   3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 833 0.69 0.471141
Target:  5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3'
miRNA:   3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 132602 0.69 0.499335
Target:  5'- cCGGCgGAGC-GGCacccggGGGCGGCCccgGCCCc -3'
miRNA:   3'- -GUCG-CUCGuCCG------UCCGUCGGca-UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.