miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13091 3' -60.2 NC_003401.1 + 57741 0.74 0.276654
Target:  5'- gCGGCGAGCGGGUauaccuGGGCGGCCauugauaaaacaacaGUAUUCa -3'
miRNA:   3'- -GUCGCUCGUCCG------UCCGUCGG---------------CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 125222 0.67 0.617983
Target:  5'- uGGCGucgcGCGGGUaucucacgcccAGGUaccGGCCGUugGCCCa -3'
miRNA:   3'- gUCGCu---CGUCCG-----------UCCG---UCGGCA--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 82589 0.67 0.617983
Target:  5'- uCGGCGAuCGGuGCGGcGCAuaUGUGCCCu -3'
miRNA:   3'- -GUCGCUcGUC-CGUC-CGUcgGCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 48427 0.66 0.648324
Target:  5'- aAGUG-GCAgcGGCAagauccGCGGCCGUugCCg -3'
miRNA:   3'- gUCGCuCGU--CCGUc-----CGUCGGCAugGG- -5'
13091 3' -60.2 NC_003401.1 + 96386 0.66 0.648324
Target:  5'- aUAGaCGAGUGGGCGGGCaaaGGCuCGUcGCgCa -3'
miRNA:   3'- -GUC-GCUCGUCCGUCCG---UCG-GCA-UGgG- -5'
13091 3' -60.2 NC_003401.1 + 63792 0.66 0.668501
Target:  5'- aGGCGGGCgAGGCccguGGCgaaaAGCCGUcagcuucuccGCCa -3'
miRNA:   3'- gUCGCUCG-UCCGu---CCG----UCGGCA----------UGGg -5'
13091 3' -60.2 NC_003401.1 + 132499 0.66 0.678551
Target:  5'- cCGGcCGAGCccGGC-GGC-GCCGcGCCCc -3'
miRNA:   3'- -GUC-GCUCGu-CCGuCCGuCGGCaUGGG- -5'
13091 3' -60.2 NC_003401.1 + 28061 0.66 0.69853
Target:  5'- uGGCGAGaCGGuGCcggAGcGUAGCCGUACg- -3'
miRNA:   3'- gUCGCUC-GUC-CG---UC-CGUCGGCAUGgg -5'
13091 3' -60.2 NC_003401.1 + 118176 0.66 0.69853
Target:  5'- uCAGUGAcccGCGGGCGaccccGGCGGCgGcACCg -3'
miRNA:   3'- -GUCGCU---CGUCCGU-----CCGUCGgCaUGGg -5'
13091 3' -60.2 NC_003401.1 + 23643 0.67 0.597796
Target:  5'- -cGCGAGCGgccGGCAGGUggcGCCGcgcuuuCCCc -3'
miRNA:   3'- guCGCUCGU---CCGUCCGu--CGGCau----GGG- -5'
13091 3' -60.2 NC_003401.1 + 70646 0.68 0.567715
Target:  5'- uGGcCGAGCAaGGCaccucacaggGGGCAcauGCCGUAUCUg -3'
miRNA:   3'- gUC-GCUCGU-CCG----------UCCGU---CGGCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 125808 0.68 0.538032
Target:  5'- uCGGCGAGguGGCccAGGUuguguuGGuuGcACCCg -3'
miRNA:   3'- -GUCGCUCguCCG--UCCG------UCggCaUGGG- -5'
13091 3' -60.2 NC_003401.1 + 121925 0.73 0.278592
Target:  5'- gAGCGGGgGGcGCGGGUgcggcggcuggcgcGGCCGUGCCa -3'
miRNA:   3'- gUCGCUCgUC-CGUCCG--------------UCGGCAUGGg -5'
13091 3' -60.2 NC_003401.1 + 84046 0.72 0.351746
Target:  5'- -cGUGGGCaaggGGGCGGGCAGCgGcauuCCCg -3'
miRNA:   3'- guCGCUCG----UCCGUCCGUCGgCau--GGG- -5'
13091 3' -60.2 NC_003401.1 + 54848 0.71 0.367441
Target:  5'- uGGUGaAGCAGGCgaccgaauucuGGGCGGCUaGUGCUCg -3'
miRNA:   3'- gUCGC-UCGUCCG-----------UCCGUCGG-CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 16885 0.7 0.426042
Target:  5'- uGGCGAGCAGGUgcgAGG-AGCUGc-CCCa -3'
miRNA:   3'- gUCGCUCGUCCG---UCCgUCGGCauGGG- -5'
13091 3' -60.2 NC_003401.1 + 132558 0.7 0.426042
Target:  5'- gCGGCGcGC-GGCucccgaugccGGGCGGCCGccGCCCg -3'
miRNA:   3'- -GUCGCuCGuCCG----------UCCGUCGGCa-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 105485 0.7 0.443779
Target:  5'- -cGCaaGGcCAGGguGGCGGCCGUcACCUg -3'
miRNA:   3'- guCGc-UC-GUCCguCCGUCGGCA-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 119810 0.7 0.456439
Target:  5'- gCAGCGgcaccgaggcuaaacAGCGcGCAGGCGGCCGccACCa -3'
miRNA:   3'- -GUCGC---------------UCGUcCGUCCGUCGGCa-UGGg -5'
13091 3' -60.2 NC_003401.1 + 26916 0.68 0.535091
Target:  5'- -uGUGGGCucGGGCAGGCGGaguacuugcaccucCCGUguuuaGCCCu -3'
miRNA:   3'- guCGCUCG--UCCGUCCGUC--------------GGCA-----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.