Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13091 | 3' | -60.2 | NC_003401.1 | + | 222 | 1.11 | 0.000623 |
Target: 5'- cCAGCGAGCAGGCAGGCAGCCGUACCCg -3' miRNA: 3'- -GUCGCUCGUCCGUCCGUCGGCAUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 110891 | 0.67 | 0.607881 |
Target: 5'- uCGGgGGGCguauAGGCAGGUgaggcacaaccAGCCGUAgUCu -3' miRNA: 3'- -GUCgCUCG----UCCGUCCG-----------UCGGCAUgGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 24774 | 0.67 | 0.638212 |
Target: 5'- -uGCGAGCGGGCuAGGaacaaaAGCCGcaGCgCg -3' miRNA: 3'- guCGCUCGUCCG-UCCg-----UCGGCa-UGgG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 921 | 0.66 | 0.678551 |
Target: 5'- -cGC-AGCuGGCcGGCAGCCcUACUCu -3' miRNA: 3'- guCGcUCGuCCGuCCGUCGGcAUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132997 | 0.72 | 0.329108 |
Target: 5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3' miRNA: 3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 326 | 0.72 | 0.329108 |
Target: 5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3' miRNA: 3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 18171 | 0.7 | 0.434858 |
Target: 5'- gGGUGGGCAGGaCGGGU--CCGgacugGCCCa -3' miRNA: 3'- gUCGCUCGUCC-GUCCGucGGCa----UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 133548 | 0.69 | 0.471141 |
Target: 5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3' miRNA: 3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132419 | 0.69 | 0.508899 |
Target: 5'- -cGCGGGggacccucgcccCGGGCGcaagauGGCGGCCGcgGCCCg -3' miRNA: 3'- guCGCUC------------GUCCGU------CCGUCGGCa-UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 122108 | 0.67 | 0.587735 |
Target: 5'- gCAGgGGGCGuGGCAcGGCcgcgccAGCCGccgcACCCg -3' miRNA: 3'- -GUCgCUCGU-CCGU-CCG------UCGGCa---UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 133137 | 0.68 | 0.557769 |
Target: 5'- cCAGCGAGCAagcaaGCAGGCcAGCgagcaGCCCu -3' miRNA: 3'- -GUCGCUCGUc----CGUCCG-UCGgca--UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132602 | 0.69 | 0.499335 |
Target: 5'- cCGGCgGAGC-GGCacccggGGGCGGCCccgGCCCc -3' miRNA: 3'- -GUCG-CUCGuCCG------UCCGUCGGca-UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 116524 | 0.74 | 0.243592 |
Target: 5'- cCAG-GAGCcuuGGCAGGCAGUCGcACCUc -3' miRNA: 3'- -GUCgCUCGu--CCGUCCGUCGGCaUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 402 | 0.68 | 0.557769 |
Target: 5'- cCAGCGAGCAagcaaGCAGGCcAGCgagcaGCCCu -3' miRNA: 3'- -GUCGCUCGUc----CGUCCG-UCGgca--UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132517 | 0.73 | 0.293811 |
Target: 5'- gGGCGGccGgGGGC-GGCGGCCGcggGCCCg -3' miRNA: 3'- gUCGCU--CgUCCGuCCGUCGGCa--UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 833 | 0.69 | 0.471141 |
Target: 5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3' miRNA: 3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 12445 | 0.68 | 0.577706 |
Target: 5'- -uGUGAGCAcGCGGGC-GCCGagGCCg -3' miRNA: 3'- guCGCUCGUcCGUCCGuCGGCa-UGGg -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 117017 | 0.67 | 0.627085 |
Target: 5'- uUAGgGGGUuccccagguaccuAGGUcGGCAGCCuGUGCCUc -3' miRNA: 3'- -GUCgCUCG-------------UCCGuCCGUCGG-CAUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 133061 | 0.72 | 0.329108 |
Target: 5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3' miRNA: 3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 262 | 0.72 | 0.329108 |
Target: 5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3' miRNA: 3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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