miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13091 3' -60.2 NC_003401.1 + 222 1.11 0.000623
Target:  5'- cCAGCGAGCAGGCAGGCAGCCGUACCCg -3'
miRNA:   3'- -GUCGCUCGUCCGUCCGUCGGCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 262 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 326 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 402 0.68 0.557769
Target:  5'- cCAGCGAGCAagcaaGCAGGCcAGCgagcaGCCCu -3'
miRNA:   3'- -GUCGCUCGUc----CGUCCG-UCGgca--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 833 0.69 0.471141
Target:  5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3'
miRNA:   3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 921 0.66 0.678551
Target:  5'- -cGC-AGCuGGCcGGCAGCCcUACUCu -3'
miRNA:   3'- guCGcUCGuCCGuCCGUCGGcAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 12445 0.68 0.577706
Target:  5'- -uGUGAGCAcGCGGGC-GCCGagGCCg -3'
miRNA:   3'- guCGCUCGUcCGUCCGuCGGCa-UGGg -5'
13091 3' -60.2 NC_003401.1 + 16885 0.7 0.426042
Target:  5'- uGGCGAGCAGGUgcgAGG-AGCUGc-CCCa -3'
miRNA:   3'- gUCGCUCGUCCG---UCCgUCGGCauGGG- -5'
13091 3' -60.2 NC_003401.1 + 18171 0.7 0.434858
Target:  5'- gGGUGGGCAGGaCGGGU--CCGgacugGCCCa -3'
miRNA:   3'- gUCGCUCGUCC-GUCCGucGGCa----UGGG- -5'
13091 3' -60.2 NC_003401.1 + 22369 0.66 0.677547
Target:  5'- gCAGCGGGauuUAGaaacaccauuaacGCAGacGCGGCCGUGCCa -3'
miRNA:   3'- -GUCGCUC---GUC-------------CGUC--CGUCGGCAUGGg -5'
13091 3' -60.2 NC_003401.1 + 22768 0.66 0.668501
Target:  5'- aCGGCGAGCGuGGCGcugguGGCAacGCaCGagcgACCCc -3'
miRNA:   3'- -GUCGCUCGU-CCGU-----CCGU--CG-GCa---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 23643 0.67 0.597796
Target:  5'- -cGCGAGCGgccGGCAGGUggcGCCGcgcuuuCCCc -3'
miRNA:   3'- guCGCUCGU---CCGUCCGu--CGGCau----GGG- -5'
13091 3' -60.2 NC_003401.1 + 24774 0.67 0.638212
Target:  5'- -uGCGAGCGGGCuAGGaacaaaAGCCGcaGCgCg -3'
miRNA:   3'- guCGCUCGUCCG-UCCg-----UCGGCa-UGgG- -5'
13091 3' -60.2 NC_003401.1 + 26916 0.68 0.535091
Target:  5'- -uGUGGGCucGGGCAGGCGGaguacuugcaccucCCGUguuuaGCCCu -3'
miRNA:   3'- guCGCUCG--UCCGUCCGUC--------------GGCA-----UGGG- -5'
13091 3' -60.2 NC_003401.1 + 28061 0.66 0.69853
Target:  5'- uGGCGAGaCGGuGCcggAGcGUAGCCGUACg- -3'
miRNA:   3'- gUCGCUC-GUC-CG---UC-CGUCGGCAUGgg -5'
13091 3' -60.2 NC_003401.1 + 48427 0.66 0.648324
Target:  5'- aAGUG-GCAgcGGCAagauccGCGGCCGUugCCg -3'
miRNA:   3'- gUCGCuCGU--CCGUc-----CGUCGGCAugGG- -5'
13091 3' -60.2 NC_003401.1 + 54848 0.71 0.367441
Target:  5'- uGGUGaAGCAGGCgaccgaauucuGGGCGGCUaGUGCUCg -3'
miRNA:   3'- gUCGC-UCGUCCG-----------UCCGUCGG-CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 57741 0.74 0.276654
Target:  5'- gCGGCGAGCGGGUauaccuGGGCGGCCauugauaaaacaacaGUAUUCa -3'
miRNA:   3'- -GUCGCUCGUCCG------UCCGUCGG---------------CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 63792 0.66 0.668501
Target:  5'- aGGCGGGCgAGGCccguGGCgaaaAGCCGUcagcuucuccGCCa -3'
miRNA:   3'- gUCGCUCG-UCCGu---CCG----UCGGCA----------UGGg -5'
13091 3' -60.2 NC_003401.1 + 66863 0.66 0.668501
Target:  5'- -cGCGAGCGcccCAGGCAGCUacggGCCUg -3'
miRNA:   3'- guCGCUCGUcc-GUCCGUCGGca--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.