Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13091 | 3' | -60.2 | NC_003401.1 | + | 70646 | 0.68 | 0.567715 |
Target: 5'- uGGcCGAGCAaGGCaccucacaggGGGCAcauGCCGUAUCUg -3' miRNA: 3'- gUC-GCUCGU-CCG----------UCCGU---CGGCAUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 80103 | 0.66 | 0.654385 |
Target: 5'- aGGCGGGCAGGguaucugaauacaCGGuaaaGCAGCugcucgggcuacuuCGUACCCg -3' miRNA: 3'- gUCGCUCGUCC-------------GUC----CGUCG--------------GCAUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 82589 | 0.67 | 0.617983 |
Target: 5'- uCGGCGAuCGGuGCGGcGCAuaUGUGCCCu -3' miRNA: 3'- -GUCGCUcGUC-CGUC-CGUcgGCAUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 84046 | 0.72 | 0.351746 |
Target: 5'- -cGUGGGCaaggGGGCGGGCAGCgGcauuCCCg -3' miRNA: 3'- guCGCUCG----UCCGUCCGUCGgCau--GGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 96386 | 0.66 | 0.648324 |
Target: 5'- aUAGaCGAGUGGGCGGGCaaaGGCuCGUcGCgCa -3' miRNA: 3'- -GUC-GCUCGUCCGUCCG---UCG-GCA-UGgG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 105485 | 0.7 | 0.443779 |
Target: 5'- -cGCaaGGcCAGGguGGCGGCCGUcACCUg -3' miRNA: 3'- guCGc-UC-GUCCguCCGUCGGCA-UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 110891 | 0.67 | 0.607881 |
Target: 5'- uCGGgGGGCguauAGGCAGGUgaggcacaaccAGCCGUAgUCu -3' miRNA: 3'- -GUCgCUCG----UCCGUCCG-----------UCGGCAUgGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 116524 | 0.74 | 0.243592 |
Target: 5'- cCAG-GAGCcuuGGCAGGCAGUCGcACCUc -3' miRNA: 3'- -GUCgCUCGu--CCGUCCGUCGGCaUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 117017 | 0.67 | 0.627085 |
Target: 5'- uUAGgGGGUuccccagguaccuAGGUcGGCAGCCuGUGCCUc -3' miRNA: 3'- -GUCgCUCG-------------UCCGuCCGUCGG-CAUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 118176 | 0.66 | 0.69853 |
Target: 5'- uCAGUGAcccGCGGGCGaccccGGCGGCgGcACCg -3' miRNA: 3'- -GUCGCU---CGUCCGU-----CCGUCGgCaUGGg -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 119810 | 0.7 | 0.456439 |
Target: 5'- gCAGCGgcaccgaggcuaaacAGCGcGCAGGCGGCCGccACCa -3' miRNA: 3'- -GUCGC---------------UCGUcCGUCCGUCGGCa-UGGg -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 121925 | 0.73 | 0.278592 |
Target: 5'- gAGCGGGgGGcGCGGGUgcggcggcuggcgcGGCCGUGCCa -3' miRNA: 3'- gUCGCUCgUC-CGUCCG--------------UCGGCAUGGg -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 122108 | 0.67 | 0.587735 |
Target: 5'- gCAGgGGGCGuGGCAcGGCcgcgccAGCCGccgcACCCg -3' miRNA: 3'- -GUCgCUCGU-CCGU-CCG------UCGGCa---UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 125222 | 0.67 | 0.617983 |
Target: 5'- uGGCGucgcGCGGGUaucucacgcccAGGUaccGGCCGUugGCCCa -3' miRNA: 3'- gUCGCu---CGUCCG-----------UCCG---UCGGCA--UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 125808 | 0.68 | 0.538032 |
Target: 5'- uCGGCGAGguGGCccAGGUuguguuGGuuGcACCCg -3' miRNA: 3'- -GUCGCUCguCCG--UCCG------UCggCaUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132419 | 0.69 | 0.508899 |
Target: 5'- -cGCGGGggacccucgcccCGGGCGcaagauGGCGGCCGcgGCCCg -3' miRNA: 3'- guCGCUC------------GUCCGU------CCGUCGGCa-UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132499 | 0.66 | 0.678551 |
Target: 5'- cCGGcCGAGCccGGC-GGC-GCCGcGCCCc -3' miRNA: 3'- -GUC-GCUCGu-CCGuCCGuCGGCaUGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132517 | 0.73 | 0.293811 |
Target: 5'- gGGCGGccGgGGGC-GGCGGCCGcggGCCCg -3' miRNA: 3'- gUCGCU--CgUCCGuCCGUCGGCa--UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132558 | 0.7 | 0.426042 |
Target: 5'- gCGGCGcGC-GGCucccgaugccGGGCGGCCGccGCCCg -3' miRNA: 3'- -GUCGCuCGuCCG----------UCCGUCGGCa-UGGG- -5' |
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13091 | 3' | -60.2 | NC_003401.1 | + | 132602 | 0.69 | 0.499335 |
Target: 5'- cCGGCgGAGC-GGCacccggGGGCGGCCccgGCCCc -3' miRNA: 3'- -GUCG-CUCGuCCG------UCCGUCGGca-UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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