miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13091 3' -60.2 NC_003401.1 + 132419 0.69 0.508899
Target:  5'- -cGCGGGggacccucgcccCGGGCGcaagauGGCGGCCGcgGCCCg -3'
miRNA:   3'- guCGCUC------------GUCCGU------CCGUCGGCa-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 133137 0.68 0.557769
Target:  5'- cCAGCGAGCAagcaaGCAGGCcAGCgagcaGCCCu -3'
miRNA:   3'- -GUCGCUCGUc----CGUCCG-UCGgca--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 402 0.68 0.557769
Target:  5'- cCAGCGAGCAagcaaGCAGGCcAGCgagcaGCCCu -3'
miRNA:   3'- -GUCGCUCGUc----CGUCCG-UCGgca--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 12445 0.68 0.577706
Target:  5'- -uGUGAGCAcGCGGGC-GCCGagGCCg -3'
miRNA:   3'- guCGCUCGUcCGUCCGuCGGCa-UGGg -5'
13091 3' -60.2 NC_003401.1 + 122108 0.67 0.587735
Target:  5'- gCAGgGGGCGuGGCAcGGCcgcgccAGCCGccgcACCCg -3'
miRNA:   3'- -GUCgCUCGU-CCGU-CCG------UCGGCa---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 110891 0.67 0.607881
Target:  5'- uCGGgGGGCguauAGGCAGGUgaggcacaaccAGCCGUAgUCu -3'
miRNA:   3'- -GUCgCUCG----UCCGUCCG-----------UCGGCAUgGG- -5'
13091 3' -60.2 NC_003401.1 + 117017 0.67 0.627085
Target:  5'- uUAGgGGGUuccccagguaccuAGGUcGGCAGCCuGUGCCUc -3'
miRNA:   3'- -GUCgCUCG-------------UCCGuCCGUCGG-CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 24774 0.67 0.638212
Target:  5'- -uGCGAGCGGGCuAGGaacaaaAGCCGcaGCgCg -3'
miRNA:   3'- guCGCUCGUCCG-UCCg-----UCGGCa-UGgG- -5'
13091 3' -60.2 NC_003401.1 + 80103 0.66 0.654385
Target:  5'- aGGCGGGCAGGguaucugaauacaCGGuaaaGCAGCugcucgggcuacuuCGUACCCg -3'
miRNA:   3'- gUCGCUCGUCC-------------GUC----CGUCG--------------GCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 132602 0.69 0.499335
Target:  5'- cCGGCgGAGC-GGCacccggGGGCGGCCccgGCCCc -3'
miRNA:   3'- -GUCG-CUCGuCCG------UCCGUCGGca-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 833 0.69 0.471141
Target:  5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3'
miRNA:   3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 133548 0.69 0.471141
Target:  5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3'
miRNA:   3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 222 1.11 0.000623
Target:  5'- cCAGCGAGCAGGCAGGCAGCCGUACCCg -3'
miRNA:   3'- -GUCGCUCGUCCGUCCGUCGGCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 116524 0.74 0.243592
Target:  5'- cCAG-GAGCcuuGGCAGGCAGUCGcACCUc -3'
miRNA:   3'- -GUCgCUCGu--CCGUCCGUCGGCaUGGG- -5'
13091 3' -60.2 NC_003401.1 + 132517 0.73 0.293811
Target:  5'- gGGCGGccGgGGGC-GGCGGCCGcggGCCCg -3'
miRNA:   3'- gUCGCU--CgUCCGuCCGUCGGCa--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 133061 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 132997 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 326 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 262 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 18171 0.7 0.434858
Target:  5'- gGGUGGGCAGGaCGGGU--CCGgacugGCCCa -3'
miRNA:   3'- gUCGCUCGUCC-GUCCGucGGCa----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.