miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 5' -55.4 NC_003401.1 + 224 0.7 0.663556
Target:  5'- gGCCAGCGAGCAGgcaggcagccguaCCCgguguCUcaCAAGCa -3'
miRNA:   3'- -CGGUCGCUCGUC-------------GGGau---GAucGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 264 0.85 0.105642
Target:  5'- gGCCAGCGAGCaAGCaggCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG-UCG---GGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 328 0.85 0.105642
Target:  5'- gGCCAGCGAGCaAGCaggCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG-UCG---GGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 357 0.7 0.706065
Target:  5'- ------cAGCAGCCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- cggucgcUCGUCGGGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 384 1.12 0.001383
Target:  5'- gGCCAGCGAGCAGCCCUACUAGCAAGCc -3'
miRNA:   3'- -CGGUCGCUCGUCGGGAUGAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 424 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 464 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 496 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 504 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 536 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 544 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 576 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 580 0.81 0.174623
Target:  5'- aGCaAGCaAGCAGCCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGgUCGcUCGUCGGGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 616 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 651 0.82 0.157373
Target:  5'- -gCAGCccAGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- cgGUCGc-UCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 656 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 691 0.82 0.157373
Target:  5'- -gCAGCccAGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- cgGUCGc-UCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 731 0.8 0.208879
Target:  5'- -gCAGCccAGCAGCCCUACUAGCA-GCc -3'
miRNA:   3'- cgGUCGc-UCGUCGGGAUGAUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 791 0.82 0.157373
Target:  5'- -gCAGCccAGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- cgGUCGc-UCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 832 0.96 0.019423
Target:  5'- aGCCAGCaGGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- -CGGUCGcUCGUCGGGAUGAUCGU----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.