miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 5' -55.4 NC_003401.1 + 133291 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 123220 0.67 0.830299
Target:  5'- aCCGGCGuGCcGCCCgaGCUGuGCA-GCg -3'
miRNA:   3'- cGGUCGCuCGuCGGGa-UGAU-CGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 496 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 536 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 576 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 616 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 656 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 133211 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 133251 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 91800 0.67 0.825116
Target:  5'- uGUCAGCG-GCAgGCCCUaacuuccagaaucucAUUGGCGugccAGCg -3'
miRNA:   3'- -CGGUCGCuCGU-CGGGA---------------UGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 127886 0.67 0.821624
Target:  5'- uGCCGGUGcGC-GCCagCUGCUGGCAguggAGUg -3'
miRNA:   3'- -CGGUCGCuCGuCGG--GAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 120665 0.67 0.821624
Target:  5'- aCCAGUGAcgcguuuccuGCAGUCUggguuuucacCUGGCAAGCg -3'
miRNA:   3'- cGGUCGCU----------CGUCGGGau--------GAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 9363 0.73 0.508494
Target:  5'- cCUAGCGccGGC-GCCCUACUGGCcgggaagAAGCg -3'
miRNA:   3'- cGGUCGC--UCGuCGGGAUGAUCG-------UUCG- -5'
13093 5' -55.4 NC_003401.1 + 124330 0.72 0.543795
Target:  5'- uGCCAacGCGAGCcucuauaggacGGCCCUGCgucacccagagaccAGCGAGUg -3'
miRNA:   3'- -CGGU--CGCUCG-----------UCGGGAUGa-------------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 23640 0.72 0.570528
Target:  5'- cGCC-GCGAGCGGCCg-GC-AGguGGCg -3'
miRNA:   3'- -CGGuCGCUCGUCGGgaUGaUCguUCG- -5'
13093 5' -55.4 NC_003401.1 + 119803 0.69 0.716291
Target:  5'- aGgCGGCGcAGCGGCaCCgagGCUAaacagcgcGCAGGCg -3'
miRNA:   3'- -CgGUCGC-UCGUCG-GGa--UGAU--------CGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 106114 0.69 0.736507
Target:  5'- uCCAGUG-GCGGgCCUGCaaauuucgagAGCAGGCc -3'
miRNA:   3'- cGGUCGCuCGUCgGGAUGa---------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 61595 0.69 0.746476
Target:  5'- cGCCAGgGGGCGGuUCCgUGCaUAGUAuGCg -3'
miRNA:   3'- -CGGUCgCUCGUC-GGG-AUG-AUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 73131 0.68 0.775715
Target:  5'- aGCCGGCGuucGGCAGgcaaCCCUccACUuuGGCAcGCg -3'
miRNA:   3'- -CGGUCGC---UCGUC----GGGA--UGA--UCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 21824 0.68 0.810078
Target:  5'- aGCUugGGCGGggccgaccacaggcGCGGCCCgGCUguuAGCGAGUa -3'
miRNA:   3'- -CGG--UCGCU--------------CGUCGGGaUGA---UCGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.