miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 5' -55.4 NC_003401.1 + 61595 0.69 0.746476
Target:  5'- cGCCAGgGGGCGGuUCCgUGCaUAGUAuGCg -3'
miRNA:   3'- -CGGUCgCUCGUC-GGG-AUG-AUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 73131 0.68 0.775715
Target:  5'- aGCCGGCGuucGGCAGgcaaCCCUccACUuuGGCAcGCg -3'
miRNA:   3'- -CGGUCGC---UCGUC----GGGA--UGA--UCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 21824 0.68 0.810078
Target:  5'- aGCUugGGCGGggccgaccacaggcGCGGCCCgGCUguuAGCGAGUa -3'
miRNA:   3'- -CGG--UCGCU--------------CGUCGGGaUGA---UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 120665 0.67 0.821624
Target:  5'- aCCAGUGAcgcguuuccuGCAGUCUggguuuucacCUGGCAAGCg -3'
miRNA:   3'- cGGUCGCU----------CGUCGGGau--------GAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 127886 0.67 0.821624
Target:  5'- uGCCGGUGcGC-GCCagCUGCUGGCAguggAGUg -3'
miRNA:   3'- -CGGUCGCuCGuCGG--GAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 91800 0.67 0.825116
Target:  5'- uGUCAGCG-GCAgGCCCUaacuuccagaaucucAUUGGCGugccAGCg -3'
miRNA:   3'- -CGGUCGCuCGU-CGGGA---------------UGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 328 0.85 0.105642
Target:  5'- gGCCAGCGAGCaAGCaggCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG-UCG---GGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 264 0.85 0.105642
Target:  5'- gGCCAGCGAGCaAGCaggCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG-UCG---GGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133506 0.82 0.157373
Target:  5'- -gCAGCccAGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- cgGUCGc-UCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 133406 0.82 0.157373
Target:  5'- -gCAGCccAGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- cgGUCGc-UCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 133366 0.82 0.157373
Target:  5'- -gCAGCccAGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- cgGUCGc-UCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 791 0.82 0.157373
Target:  5'- -gCAGCccAGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- cgGUCGc-UCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 132999 0.85 0.105642
Target:  5'- gGCCAGCGAGCaAGCaggCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG-UCG---GGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133063 0.85 0.105642
Target:  5'- gGCCAGCGAGCaAGCaggCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG-UCG---GGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 891 0.86 0.087393
Target:  5'- cCCAGCugcacAGCAGCCCUAgUAGCAGGCa -3'
miRNA:   3'- cGGUCGc----UCGUCGGGAUgAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133606 0.86 0.087393
Target:  5'- cCCAGCugcacAGCAGCCCUAgUAGCAGGCa -3'
miRNA:   3'- cGGUCGc----UCGUCGGGAUgAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 832 0.96 0.019423
Target:  5'- aGCCAGCaGGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- -CGGUCGcUCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 133547 0.96 0.019423
Target:  5'- aGCCAGCaGGCAGCCCUACUAGCAgcccAGCa -3'
miRNA:   3'- -CGGUCGcUCGUCGGGAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 384 1.12 0.001383
Target:  5'- gGCCAGCGAGCAGCCCUACUAGCAAGCc -3'
miRNA:   3'- -CGGUCGCUCGUCGGGAUGAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 89034 0.66 0.892269
Target:  5'- aGCCAguuuauGCGAGCGGaCCCUcagagaUGGCGgaaggacgGGCa -3'
miRNA:   3'- -CGGU------CGCUCGUC-GGGAug----AUCGU--------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.