miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 5' -55.4 NC_003401.1 + 424 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 544 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133179 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133259 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 464 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 504 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133219 0.79 0.248781
Target:  5'- gGCCAGCGAGCaagcaagcaGGCCa-GCgAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG---------UCGGgaUGaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 1059 0.77 0.301149
Target:  5'- cGUUAGCaacaaaccAGCAGCCCUACUguuuuucAGCAAGCa -3'
miRNA:   3'- -CGGUCGc-------UCGUCGGGAUGA-------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 23237 0.75 0.405812
Target:  5'- gGCCAGgGGGUuguuGCCCUGuuuucgGGCAGGCg -3'
miRNA:   3'- -CGGUCgCUCGu---CGGGAUga----UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 122576 0.74 0.479996
Target:  5'- cGCCGGUGAGCcgcGGCCCUaagccuuauaguGCUGuGCA-GCg -3'
miRNA:   3'- -CGGUCGCUCG---UCGGGA------------UGAU-CGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 22771 0.73 0.49957
Target:  5'- aGCaCGGCGAGCguGGCgCUGgUGGCAAcGCa -3'
miRNA:   3'- -CG-GUCGCUCG--UCGgGAUgAUCGUU-CG- -5'
13093 5' -55.4 NC_003401.1 + 9363 0.73 0.508494
Target:  5'- cCUAGCGccGGC-GCCCUACUGGCcgggaagAAGCg -3'
miRNA:   3'- cGGUCGC--UCGuCGGGAUGAUCG-------UUCG- -5'
13093 5' -55.4 NC_003401.1 + 132454 0.73 0.519491
Target:  5'- gGCCGGCG-GC-GCCCgGCgcGCGGGCc -3'
miRNA:   3'- -CGGUCGCuCGuCGGGaUGauCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 124330 0.72 0.543795
Target:  5'- uGCCAacGCGAGCcucuauaggacGGCCCUGCgucacccagagaccAGCGAGUg -3'
miRNA:   3'- -CGGU--CGCUCG-----------UCGGGAUGa-------------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 23640 0.72 0.570528
Target:  5'- cGCC-GCGAGCGGCCg-GC-AGguGGCg -3'
miRNA:   3'- -CGGuCGCUCGUCGGgaUGaUCguUCG- -5'
13093 5' -55.4 NC_003401.1 + 861 0.71 0.622692
Target:  5'- ------aAGCGGCCCcACUAGCAAGCa -3'
miRNA:   3'- cggucgcUCGUCGGGaUGAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133576 0.71 0.622692
Target:  5'- ------aAGCGGCCCcACUAGCAAGCa -3'
miRNA:   3'- cggucgcUCGUCGGGaUGAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 132959 0.7 0.663556
Target:  5'- gGCCAGCGAGCAGgcaggcagccguaCCCgguguCUcaCAAGCa -3'
miRNA:   3'- -CGGUCGCUCGUC-------------GGGau---GAucGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 224 0.7 0.663556
Target:  5'- gGCCAGCGAGCAGgcaggcagccguaCCCgguguCUcaCAAGCa -3'
miRNA:   3'- -CGGUCGCUCGUC-------------GGGau---GAucGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133092 0.7 0.706065
Target:  5'- ------cAGCAGCCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- cggucgcUCGUCGGGAUGA--------UCGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.