miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 5' -55.4 NC_003401.1 + 133633 0.67 0.830299
Target:  5'- aGCUGGCcGGCAGCCCUACUc------ -3'
miRNA:   3'- -CGGUCGcUCGUCGGGAUGAucguucg -5'
13093 5' -55.4 NC_003401.1 + 7568 0.67 0.830299
Target:  5'- uGCCGGCGuGUuGCCgUGacaUAGCGuGCa -3'
miRNA:   3'- -CGGUCGCuCGuCGGgAUg--AUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 91800 0.67 0.825116
Target:  5'- uGUCAGCG-GCAgGCCCUaacuuccagaaucucAUUGGCGugccAGCg -3'
miRNA:   3'- -CGGUCGCuCGU-CGGGA---------------UGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 127886 0.67 0.821624
Target:  5'- uGCCGGUGcGC-GCCagCUGCUGGCAguggAGUg -3'
miRNA:   3'- -CGGUCGCuCGuCGG--GAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 120665 0.67 0.821624
Target:  5'- aCCAGUGAcgcguuuccuGCAGUCUggguuuucacCUGGCAAGCg -3'
miRNA:   3'- cGGUCGCU----------CGUCGGGau--------GAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133139 0.68 0.812768
Target:  5'- gGCCAGCGAGCA--------AGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCGUcgggaugaUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 98993 0.68 0.812768
Target:  5'- gGCCAGCGAGC-GUCUgauagggGCUAGgucucuGGCg -3'
miRNA:   3'- -CGGUCGCUCGuCGGGa------UGAUCgu----UCG- -5'
13093 5' -55.4 NC_003401.1 + 21824 0.68 0.810078
Target:  5'- aGCUugGGCGGggccgaccacaggcGCGGCCCgGCUguuAGCGAGUa -3'
miRNA:   3'- -CGG--UCGCU--------------CGUCGGGaUGA---UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 73131 0.68 0.775715
Target:  5'- aGCCGGCGuucGGCAGgcaaCCCUccACUuuGGCAcGCg -3'
miRNA:   3'- -CGGUCGC---UCGUC----GGGA--UGA--UCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 86005 0.68 0.76609
Target:  5'- aGCCAGgGGGCG--CCUGCUGG-GAGCc -3'
miRNA:   3'- -CGGUCgCUCGUcgGGAUGAUCgUUCG- -5'
13093 5' -55.4 NC_003401.1 + 14475 0.69 0.756341
Target:  5'- cGUUGGCGAGCAGCacguCUccGCGAGCa -3'
miRNA:   3'- -CGGUCGCUCGUCGggauGAu-CGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 61595 0.69 0.746476
Target:  5'- cGCCAGgGGGCGGuUCCgUGCaUAGUAuGCg -3'
miRNA:   3'- -CGGUCgCUCGUC-GGG-AUG-AUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 16864 0.69 0.746476
Target:  5'- aGCCAGCcGGCAGCCCcuccucguaUACc-GCGuGCg -3'
miRNA:   3'- -CGGUCGcUCGUCGGG---------AUGauCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 106114 0.69 0.736507
Target:  5'- uCCAGUG-GCGGgCCUGCaaauuucgagAGCAGGCc -3'
miRNA:   3'- cGGUCGCuCGUCgGGAUGa---------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 69187 0.69 0.726441
Target:  5'- uGCCGG-GAGaAGCCCcgguucgcaUACUGGCAGGa -3'
miRNA:   3'- -CGGUCgCUCgUCGGG---------AUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 119803 0.69 0.716291
Target:  5'- aGgCGGCGcAGCGGCaCCgagGCUAaacagcgcGCAGGCg -3'
miRNA:   3'- -CgGUCGC-UCGUCG-GGa--UGAU--------CGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 357 0.7 0.706065
Target:  5'- ------cAGCAGCCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- cggucgcUCGUCGGGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 133092 0.7 0.706065
Target:  5'- ------cAGCAGCCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- cggucgcUCGUCGGGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 224 0.7 0.663556
Target:  5'- gGCCAGCGAGCAGgcaggcagccguaCCCgguguCUcaCAAGCa -3'
miRNA:   3'- -CGGUCGCUCGUC-------------GGGau---GAucGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 132959 0.7 0.663556
Target:  5'- gGCCAGCGAGCAGgcaggcagccguaCCCgguguCUcaCAAGCa -3'
miRNA:   3'- -CGGUCGCUCGUC-------------GGGau---GAucGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.