miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 5' -55.4 NC_003401.1 + 861 0.71 0.622692
Target:  5'- ------aAGCGGCCCcACUAGCAAGCa -3'
miRNA:   3'- cggucgcUCGUCGGGaUGAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 891 0.86 0.087393
Target:  5'- cCCAGCugcacAGCAGCCCUAgUAGCAGGCa -3'
miRNA:   3'- cGGUCGc----UCGUCGGGAUgAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 918 0.67 0.830299
Target:  5'- aGCUGGCcGGCAGCCCUACUc------ -3'
miRNA:   3'- -CGGUCGcUCGUCGGGAUGAucguucg -5'
13093 5' -55.4 NC_003401.1 + 1059 0.77 0.301149
Target:  5'- cGUUAGCaacaaaccAGCAGCCCUACUguuuuucAGCAAGCa -3'
miRNA:   3'- -CGGUCGc-------UCGUCGGGAUGA-------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 7568 0.67 0.830299
Target:  5'- uGCCGGCGuGUuGCCgUGacaUAGCGuGCa -3'
miRNA:   3'- -CGGUCGCuCGuCGGgAUg--AUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 7603 0.66 0.898992
Target:  5'- gGCCGaCGAGCA-CCCaaaguacacgUACUGGCA-GCu -3'
miRNA:   3'- -CGGUcGCUCGUcGGG----------AUGAUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 9363 0.73 0.508494
Target:  5'- cCUAGCGccGGC-GCCCUACUGGCcgggaagAAGCg -3'
miRNA:   3'- cGGUCGC--UCGuCGGGAUGAUCG-------UUCG- -5'
13093 5' -55.4 NC_003401.1 + 14475 0.69 0.756341
Target:  5'- cGUUGGCGAGCAGCacguCUccGCGAGCa -3'
miRNA:   3'- -CGGUCGCUCGUCGggauGAu-CGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 16864 0.69 0.746476
Target:  5'- aGCCAGCcGGCAGCCCcuccucguaUACc-GCGuGCg -3'
miRNA:   3'- -CGGUCGcUCGUCGGG---------AUGauCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 21824 0.68 0.810078
Target:  5'- aGCUugGGCGGggccgaccacaggcGCGGCCCgGCUguuAGCGAGUa -3'
miRNA:   3'- -CGG--UCGCU--------------CGUCGGGaUGA---UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 22771 0.73 0.49957
Target:  5'- aGCaCGGCGAGCguGGCgCUGgUGGCAAcGCa -3'
miRNA:   3'- -CG-GUCGCUCG--UCGgGAUgAUCGUU-CG- -5'
13093 5' -55.4 NC_003401.1 + 23237 0.75 0.405812
Target:  5'- gGCCAGgGGGUuguuGCCCUGuuuucgGGCAGGCg -3'
miRNA:   3'- -CGGUCgCUCGu---CGGGAUga----UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 23640 0.72 0.570528
Target:  5'- cGCC-GCGAGCGGCCg-GC-AGguGGCg -3'
miRNA:   3'- -CGGuCGCUCGUCGGgaUGaUCguUCG- -5'
13093 5' -55.4 NC_003401.1 + 61595 0.69 0.746476
Target:  5'- cGCCAGgGGGCGGuUCCgUGCaUAGUAuGCg -3'
miRNA:   3'- -CGGUCgCUCGUC-GGG-AUG-AUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 63944 0.66 0.870681
Target:  5'- cGCCA-CGGGCcucGCCCgcCUGGuCAGGUg -3'
miRNA:   3'- -CGGUcGCUCGu--CGGGauGAUC-GUUCG- -5'
13093 5' -55.4 NC_003401.1 + 69187 0.69 0.726441
Target:  5'- uGCCGG-GAGaAGCCCcgguucgcaUACUGGCAGGa -3'
miRNA:   3'- -CGGUCgCUCgUCGGG---------AUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 73131 0.68 0.775715
Target:  5'- aGCCGGCGuucGGCAGgcaaCCCUccACUuuGGCAcGCg -3'
miRNA:   3'- -CGGUCGC---UCGUC----GGGA--UGA--UCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 86005 0.68 0.76609
Target:  5'- aGCCAGgGGGCG--CCUGCUGG-GAGCc -3'
miRNA:   3'- -CGGUCgCUCGUcgGGAUGAUCgUUCG- -5'
13093 5' -55.4 NC_003401.1 + 89034 0.66 0.892269
Target:  5'- aGCCAguuuauGCGAGCGGaCCCUcagagaUGGCGgaaggacgGGCa -3'
miRNA:   3'- -CGGU------CGCUCGUC-GGGAug----AUCGU--------UCG- -5'
13093 5' -55.4 NC_003401.1 + 91714 0.67 0.852753
Target:  5'- -gCGGaCGAGCGGCUCUcgaccggaaaaaaaACacGGCAAGCg -3'
miRNA:   3'- cgGUC-GCUCGUCGGGA--------------UGa-UCGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.