miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13095 5' -57.7 NC_003401.1 + 89010 0.66 0.797461
Target:  5'- gCCUACUAGCGGaaaUCuGCGG-UCUACa -3'
miRNA:   3'- gGGAUGAUCGUCg--GGuCGUCgGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 84179 0.66 0.797461
Target:  5'- aCCCggaaGGCGGUCCAGCcGCCaccgUGCg -3'
miRNA:   3'- -GGGaugaUCGUCGGGUCGuCGGg---AUG- -5'
13095 5' -57.7 NC_003401.1 + 105312 0.66 0.797461
Target:  5'- aCCUaacGCUAGaGGCCCAGgucaaaaaCGGCCC-ACa -3'
miRNA:   3'- gGGA---UGAUCgUCGGGUC--------GUCGGGaUG- -5'
13095 5' -57.7 NC_003401.1 + 119989 0.66 0.757057
Target:  5'- uCCCUGgUGGCGGCCgccugcgcgcuguuUAGCcucgguGCCgCUGCg -3'
miRNA:   3'- -GGGAUgAUCGUCGG--------------GUCGu-----CGG-GAUG- -5'
13095 5' -57.7 NC_003401.1 + 88958 0.67 0.750263
Target:  5'- gCCguaggGCUGGCAGggacggcaCCCAGCAGCUa--- -3'
miRNA:   3'- gGGa----UGAUCGUC--------GGGUCGUCGGgaug -5'
13095 5' -57.7 NC_003401.1 + 132492 0.67 0.740467
Target:  5'- cCCCgguCcGGCcgAGCCCGGCGGCgCCg-- -3'
miRNA:   3'- -GGGau-GaUCG--UCGGGUCGUCG-GGaug -5'
13095 5' -57.7 NC_003401.1 + 128787 0.67 0.730574
Target:  5'- -gCUGC-AGCGGCCCAGCgagGGUUCgUGCg -3'
miRNA:   3'- ggGAUGaUCGUCGGGUCG---UCGGG-AUG- -5'
13095 5' -57.7 NC_003401.1 + 17691 0.67 0.730574
Target:  5'- aCCUGCgcgaccgaaAGCcuGCCCGGUGGacCCCUGCg -3'
miRNA:   3'- gGGAUGa--------UCGu-CGGGUCGUC--GGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 238 0.67 0.730574
Target:  5'- cCCCUcaGCaAGCAGgCCagcgagcaggcaGGCAGCCgUACc -3'
miRNA:   3'- -GGGA--UGaUCGUCgGG------------UCGUCGGgAUG- -5'
13095 5' -57.7 NC_003401.1 + 132973 0.67 0.730574
Target:  5'- cCCCUcaGCaAGCAGgCCagcgagcaggcaGGCAGCCgUACc -3'
miRNA:   3'- -GGGA--UGaUCGUCgGG------------UCGUCGGgAUG- -5'
13095 5' -57.7 NC_003401.1 + 86878 0.67 0.720594
Target:  5'- uCCCUGCgAGUuuGCCagGGCagauuugcaGGCCCUGCa -3'
miRNA:   3'- -GGGAUGaUCGu-CGGg-UCG---------UCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 58237 0.67 0.710537
Target:  5'- uUCUACUAGaCAGUCCAGCcacgAGUCCc-- -3'
miRNA:   3'- gGGAUGAUC-GUCGGGUCG----UCGGGaug -5'
13095 5' -57.7 NC_003401.1 + 133013 0.67 0.699396
Target:  5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3'
miRNA:   3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133077 0.67 0.699396
Target:  5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3'
miRNA:   3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5'
13095 5' -57.7 NC_003401.1 + 278 0.67 0.699396
Target:  5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3'
miRNA:   3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5'
13095 5' -57.7 NC_003401.1 + 342 0.67 0.699396
Target:  5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3'
miRNA:   3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5'
13095 5' -57.7 NC_003401.1 + 91230 0.68 0.690228
Target:  5'- aCCUGCcgcgagAGcCAGgCCGGUAGCCCa-- -3'
miRNA:   3'- gGGAUGa-----UC-GUCgGGUCGUCGGGaug -5'
13095 5' -57.7 NC_003401.1 + 93092 0.68 0.669721
Target:  5'- ---aGCUGGCGGCCCugguguguAGCAGCUCg-- -3'
miRNA:   3'- gggaUGAUCGUCGGG--------UCGUCGGGaug -5'
13095 5' -57.7 NC_003401.1 + 132604 0.68 0.669721
Target:  5'- gCCCgGCggAGCGGCaCCcgggGGCGGCCCcgGCc -3'
miRNA:   3'- -GGGaUGa-UCGUCG-GG----UCGUCGGGa-UG- -5'
13095 5' -57.7 NC_003401.1 + 41467 0.68 0.659416
Target:  5'- aCCUGCUcaGGCAGUCCucGCGGCaCCc-- -3'
miRNA:   3'- gGGAUGA--UCGUCGGGu-CGUCG-GGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.