miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13098 5' -47.3 NC_003401.1 + 91388 0.66 0.999532
Target:  5'- cUACCGGCCUGGcucucgcggcagGUGGAUguaccgUGCAc-- -3'
miRNA:   3'- uGUGGCCGGACU------------UAUUUGa-----ACGUaac -5'
13098 5' -47.3 NC_003401.1 + 52532 0.66 0.999532
Target:  5'- -aGCCGGCgUGAGUuuuuuuACgagUGCAUUu -3'
miRNA:   3'- ugUGGCCGgACUUAuu----UGa--ACGUAAc -5'
13098 5' -47.3 NC_003401.1 + 42098 0.66 0.999412
Target:  5'- aACACgggaGGCCUGggUAacaAACggGCAggUGa -3'
miRNA:   3'- -UGUGg---CCGGACuuAU---UUGaaCGUa-AC- -5'
13098 5' -47.3 NC_003401.1 + 128061 0.66 0.999267
Target:  5'- uGCACCuGUCUGAAUGGcGCUgUGCAg-- -3'
miRNA:   3'- -UGUGGcCGGACUUAUU-UGA-ACGUaac -5'
13098 5' -47.3 NC_003401.1 + 133018 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 133038 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 133058 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 133078 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 133098 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 132998 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 132978 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 243 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 263 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 283 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 303 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 323 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 343 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 363 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 383 0.66 0.999091
Target:  5'- uCGCUGGCCUGcuu--GCUUGCu--- -3'
miRNA:   3'- uGUGGCCGGACuuauuUGAACGuaac -5'
13098 5' -47.3 NC_003401.1 + 32830 0.67 0.998332
Target:  5'- -aACCGGCCUGggUAcaucAACcUUaGCAUc- -3'
miRNA:   3'- ugUGGCCGGACuuAU----UUG-AA-CGUAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.