miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13099 5' -62.7 NC_003401.1 + 132302 0.66 0.625834
Target:  5'- cGCGCCgggCGCCGccGGCcu--CCCCCg -3'
miRNA:   3'- cUGCGGa--GCGGCauCCGcugcGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 91631 0.66 0.616042
Target:  5'- aGACGCCUCGC-----GCGACGUucaaCCCg -3'
miRNA:   3'- -CUGCGGAGCGgcaucCGCUGCGg---GGG- -5'
13099 5' -62.7 NC_003401.1 + 16309 0.66 0.606262
Target:  5'- cGCGUCUCgGUCGcgAGGUGAcCGCCCg- -3'
miRNA:   3'- cUGCGGAG-CGGCa-UCCGCU-GCGGGgg -5'
13099 5' -62.7 NC_003401.1 + 103725 0.66 0.606262
Target:  5'- gGACGCaaucaaCUCGCCGgccaacgucGUGACuCCCCCg -3'
miRNA:   3'- -CUGCG------GAGCGGCauc------CGCUGcGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 51739 0.66 0.603331
Target:  5'- cGAgGCCUCGaaCGgcGGgGACGguucaguuucaagaCCCCCa -3'
miRNA:   3'- -CUgCGGAGCg-GCauCCgCUGC--------------GGGGG- -5'
13099 5' -62.7 NC_003401.1 + 32256 0.66 0.600401
Target:  5'- cACGUCUccguccggaaCGCCGUGGGaauuacugcacccgGACGCCCUg -3'
miRNA:   3'- cUGCGGA----------GCGGCAUCCg-------------CUGCGGGGg -5'
13099 5' -62.7 NC_003401.1 + 87150 0.66 0.58676
Target:  5'- --gGCCUUGCuCGgcGGUGucaGCUCCCu -3'
miRNA:   3'- cugCGGAGCG-GCauCCGCug-CGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 128407 0.66 0.567378
Target:  5'- aGAC-CCaauaugCGCCGc-GGUGAUGCUCCCg -3'
miRNA:   3'- -CUGcGGa-----GCGGCauCCGCUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 46775 0.66 0.567378
Target:  5'- -uCGCCUCGUCGauauauaggAGGUGGaacgucUGUCCCCg -3'
miRNA:   3'- cuGCGGAGCGGCa--------UCCGCU------GCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 119778 0.67 0.557747
Target:  5'- cGACgGCCUCcgccaaucugGCCGgAGGCGGCGCagcggcaCCg -3'
miRNA:   3'- -CUG-CGGAG----------CGGCaUCCGCUGCGgg-----GG- -5'
13099 5' -62.7 NC_003401.1 + 127829 0.67 0.548163
Target:  5'- -uCGCCUCGCUGguGGUGGCGCUgUg -3'
miRNA:   3'- cuGCGGAGCGGCauCCGCUGCGGgGg -5'
13099 5' -62.7 NC_003401.1 + 23800 0.67 0.548163
Target:  5'- cGGCGCCaccUGCCGgccgcucGCGGCGCCCg- -3'
miRNA:   3'- -CUGCGGa--GCGGCauc----CGCUGCGGGgg -5'
13099 5' -62.7 NC_003401.1 + 105671 0.67 0.548163
Target:  5'- cACGCCgucuaUCGUCGUgagcgcccAGGUGACGgCCgCCa -3'
miRNA:   3'- cUGCGG-----AGCGGCA--------UCCGCUGCgGG-GG- -5'
13099 5' -62.7 NC_003401.1 + 87879 0.67 0.53768
Target:  5'- cACGgCUCGCCuuccggaGUGGGa-ACGCCUCCu -3'
miRNA:   3'- cUGCgGAGCGG-------CAUCCgcUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 89672 0.67 0.529156
Target:  5'- --aGCCUcCGCCGgagcgggaggAGGCaggGGCGUCCCUg -3'
miRNA:   3'- cugCGGA-GCGGCa---------UCCG---CUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 89868 0.67 0.529156
Target:  5'- aGGCgGCCUgCGuCCaUGGGCuugagccaggGACGCCCCUg -3'
miRNA:   3'- -CUG-CGGA-GC-GGcAUCCG----------CUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 13001 0.67 0.519744
Target:  5'- --gGCCaaGuUCGUGGGCGACGCCaucuCCg -3'
miRNA:   3'- cugCGGagC-GGCAUCCGCUGCGGg---GG- -5'
13099 5' -62.7 NC_003401.1 + 21231 0.68 0.501122
Target:  5'- uGAC-CCUCGuaGUuGGCGuCGgCCCCCc -3'
miRNA:   3'- -CUGcGGAGCggCAuCCGCuGC-GGGGG- -5'
13099 5' -62.7 NC_003401.1 + 132681 0.68 0.497433
Target:  5'- gGGCGCCUCGgCGgggcccggcgcggGGcGCGACcgaggGCCCCg -3'
miRNA:   3'- -CUGCGGAGCgGCa------------UC-CGCUG-----CGGGGg -5'
13099 5' -62.7 NC_003401.1 + 118655 0.68 0.482801
Target:  5'- uGAgGUgUCGCCgGUGGGcCGuAUGaCCCCCg -3'
miRNA:   3'- -CUgCGgAGCGG-CAUCC-GC-UGC-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.