miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13101 3' -60.6 NC_003401.1 + 8741 0.7 0.456256
Target:  5'- -cGACGGcGCGUCagccGGU-CGCCGCCACa -3'
miRNA:   3'- gaCUGCC-UGCGGa---CCAgGUGGCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 13200 1.09 0.00092
Target:  5'- gCUGACGGACGCCUGGUCCACCGCCACg -3'
miRNA:   3'- -GACUGCCUGCGGACCAGGUGGCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 20557 0.69 0.524308
Target:  5'- -cGGCGGccggucaACGCCaGGUCCauuaaaaacacaccgGCCGCCAa -3'
miRNA:   3'- gaCUGCC-------UGCGGaCCAGG---------------UGGCGGUg -5'
13101 3' -60.6 NC_003401.1 + 20872 0.67 0.58991
Target:  5'- --aACGGACGCggGGUCCuCCGCaGCu -3'
miRNA:   3'- gacUGCCUGCGgaCCAGGuGGCGgUG- -5'
13101 3' -60.6 NC_003401.1 + 22292 0.69 0.493002
Target:  5'- ----gGGACGCUU-GUCCACCGCCu- -3'
miRNA:   3'- gacugCCUGCGGAcCAGGUGGCGGug -5'
13101 3' -60.6 NC_003401.1 + 23592 0.69 0.474451
Target:  5'- gUGAC--GCGCCUGGaCgGCUGCCACc -3'
miRNA:   3'- gACUGccUGCGGACCaGgUGGCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 27091 0.68 0.570108
Target:  5'- -gGACGGACGCCacaacuggGGUCgCGCUuugGCCGu -3'
miRNA:   3'- gaCUGCCUGCGGa-------CCAG-GUGG---CGGUg -5'
13101 3' -60.6 NC_003401.1 + 49745 0.67 0.599859
Target:  5'- -cGGCGGAUGuCCUGGU-UACCGgaCACg -3'
miRNA:   3'- gaCUGCCUGC-GGACCAgGUGGCg-GUG- -5'
13101 3' -60.6 NC_003401.1 + 53188 0.67 0.639812
Target:  5'- uUGGCGGACGCUUccUCCGaauCCGCCcACc -3'
miRNA:   3'- gACUGCCUGCGGAccAGGU---GGCGG-UG- -5'
13101 3' -60.6 NC_003401.1 + 63510 0.66 0.649803
Target:  5'- gUGACGcGCGCCUcuugcaggcGGcacgaaCACCGCCGCu -3'
miRNA:   3'- gACUGCcUGCGGA---------CCag----GUGGCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 64849 0.66 0.693503
Target:  5'- -aGGCGGggucacACGCCaaccuuggcugggauUGGUUCACCaGCUACa -3'
miRNA:   3'- gaCUGCC------UGCGG---------------ACCAGGUGG-CGGUG- -5'
13101 3' -60.6 NC_003401.1 + 74792 0.67 0.638812
Target:  5'- aCUGGCGGACcgaaauaGCCaugGGUCUGCCcCCGg -3'
miRNA:   3'- -GACUGCCUG-------CGGa--CCAGGUGGcGGUg -5'
13101 3' -60.6 NC_003401.1 + 78081 0.67 0.599859
Target:  5'- cCUGcCGG-CGCCg---CCACCGCUGCa -3'
miRNA:   3'- -GACuGCCuGCGGaccaGGUGGCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 80566 0.69 0.520471
Target:  5'- aUGGCuaccuGGCGCCcaccucagagcggUGGUCCGuCCGCCAUg -3'
miRNA:   3'- gACUGc----CUGCGG-------------ACCAGGU-GGCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 82343 0.73 0.311716
Target:  5'- gUGGCGGGCGUU--GUCCGCCGCUAa -3'
miRNA:   3'- gACUGCCUGCGGacCAGGUGGCGGUg -5'
13101 3' -60.6 NC_003401.1 + 89807 0.68 0.560266
Target:  5'- gCUGACGGuGCGgCgcGGUCCguauaugccaggGCCGCCAg -3'
miRNA:   3'- -GACUGCC-UGCgGa-CCAGG------------UGGCGGUg -5'
13101 3' -60.6 NC_003401.1 + 103286 0.67 0.619817
Target:  5'- -cGGCGGugGCCUcGGaCgGCgGUCGCu -3'
miRNA:   3'- gaCUGCCugCGGA-CCaGgUGgCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 105983 0.68 0.54073
Target:  5'- cCUGGCcaaGGCGCUUGGgcgUgGCCGCCAa -3'
miRNA:   3'- -GACUGc--CUGCGGACCa--GgUGGCGGUg -5'
13101 3' -60.6 NC_003401.1 + 107617 0.75 0.214805
Target:  5'- -aGACGccACGCUcccgGGUCCGCCGCCACc -3'
miRNA:   3'- gaCUGCc-UGCGGa---CCAGGUGGCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 118209 0.67 0.643809
Target:  5'- --cGCGGGCGCUgggGGUgauauguucugaugaCCGCCGCCu- -3'
miRNA:   3'- gacUGCCUGCGGa--CCA---------------GGUGGCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.