miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13101 3' -60.6 NC_003401.1 + 119520 0.66 0.689559
Target:  5'- -cGuCGGACGCCggccGGUCaaaaaGCCACa -3'
miRNA:   3'- gaCuGCCUGCGGa---CCAGgugg-CGGUG- -5'
13101 3' -60.6 NC_003401.1 + 125221 0.72 0.340619
Target:  5'- -gGACGGGCGCCaccuggccucccUGGUCgACC-CCGCc -3'
miRNA:   3'- gaCUGCCUGCGG------------ACCAGgUGGcGGUG- -5'
13101 3' -60.6 NC_003401.1 + 126351 0.66 0.689559
Target:  5'- -cGACGGAgGCaUGGUggUUACCGCUAUc -3'
miRNA:   3'- gaCUGCCUgCGgACCA--GGUGGCGGUG- -5'
13101 3' -60.6 NC_003401.1 + 127002 0.68 0.570108
Target:  5'- -cGACGGaACGCCUGGUUaGCCcagaaaccuggGUCACc -3'
miRNA:   3'- gaCUGCC-UGCGGACCAGgUGG-----------CGGUG- -5'
13101 3' -60.6 NC_003401.1 + 127121 0.69 0.521429
Target:  5'- -aGugGGACcCCUGGgccggCCGCUGUCAg -3'
miRNA:   3'- gaCugCCUGcGGACCa----GGUGGCGGUg -5'
13101 3' -60.6 NC_003401.1 + 132364 0.66 0.689559
Target:  5'- -cGGcCGGGCGCCUccgGGcCCGgCCGCUAg -3'
miRNA:   3'- gaCU-GCCUGCGGA---CCaGGU-GGCGGUg -5'
13101 3' -60.6 NC_003401.1 + 132580 0.68 0.568136
Target:  5'- -gGGCGGcCGCCgcccggcauggcGGUCCuCCGCCGg -3'
miRNA:   3'- gaCUGCCuGCGGa-----------CCAGGuGGCGGUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.