Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13101 | 3' | -60.6 | NC_003401.1 | + | 105983 | 0.68 | 0.54073 |
Target: 5'- cCUGGCcaaGGCGCUUGGgcgUgGCCGCCAa -3' miRNA: 3'- -GACUGc--CUGCGGACCa--GgUGGCGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 127121 | 0.69 | 0.521429 |
Target: 5'- -aGugGGACcCCUGGgccggCCGCUGUCAg -3' miRNA: 3'- gaCugCCUGcGGACCa----GGUGGCGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 80566 | 0.69 | 0.520471 |
Target: 5'- aUGGCuaccuGGCGCCcaccucagagcggUGGUCCGuCCGCCAUg -3' miRNA: 3'- gACUGc----CUGCGG-------------ACCAGGU-GGCGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 125221 | 0.72 | 0.340619 |
Target: 5'- -gGACGGGCGCCaccuggccucccUGGUCgACC-CCGCc -3' miRNA: 3'- gaCUGCCUGCGG------------ACCAGgUGGcGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 82343 | 0.73 | 0.311716 |
Target: 5'- gUGGCGGGCGUU--GUCCGCCGCUAa -3' miRNA: 3'- gACUGCCUGCGGacCAGGUGGCGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 13200 | 1.09 | 0.00092 |
Target: 5'- gCUGACGGACGCCUGGUCCACCGCCACg -3' miRNA: 3'- -GACUGCCUGCGGACCAGGUGGCGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 64849 | 0.66 | 0.693503 |
Target: 5'- -aGGCGGggucacACGCCaaccuuggcugggauUGGUUCACCaGCUACa -3' miRNA: 3'- gaCUGCC------UGCGG---------------ACCAGGUGG-CGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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