Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13101 | 3' | -60.6 | NC_003401.1 | + | 53188 | 0.67 | 0.639812 |
|
Target: 5'- uUGGCGGACGCUUccUCCGaauCCGCCcACc -3' miRNA: 3'- gACUGCCUGCGGAccAGGU---GGCGG-UG- -5' |
|||||||
| 13101 | 3' | -60.6 | NC_003401.1 | + | 118209 | 0.67 | 0.643809 |
|
Target: 5'- --cGCGGGCGCUgggGGUgauauguucugaugaCCGCCGCCu- -3' miRNA: 3'- gacUGCCUGCGGa--CCA---------------GGUGGCGGug -5' |
|||||||
| 13101 | 3' | -60.6 | NC_003401.1 | + | 63510 | 0.66 | 0.649803 |
|
Target: 5'- gUGACGcGCGCCUcuugcaggcGGcacgaaCACCGCCGCu -3' miRNA: 3'- gACUGCcUGCGGA---------CCag----GUGGCGGUG- -5' |
|||||||
| 13101 | 3' | -60.6 | NC_003401.1 | + | 126351 | 0.66 | 0.689559 |
|
Target: 5'- -cGACGGAgGCaUGGUggUUACCGCUAUc -3' miRNA: 3'- gaCUGCCUgCGgACCA--GGUGGCGGUG- -5' |
|||||||
| 13101 | 3' | -60.6 | NC_003401.1 | + | 132364 | 0.66 | 0.689559 |
|
Target: 5'- -cGGcCGGGCGCCUccgGGcCCGgCCGCUAg -3' miRNA: 3'- gaCU-GCCUGCGGA---CCaGGU-GGCGGUg -5' |
|||||||
| 13101 | 3' | -60.6 | NC_003401.1 | + | 119520 | 0.66 | 0.689559 |
|
Target: 5'- -cGuCGGACGCCggccGGUCaaaaaGCCACa -3' miRNA: 3'- gaCuGCCUGCGGa---CCAGgugg-CGGUG- -5' |
|||||||
| 13101 | 3' | -60.6 | NC_003401.1 | + | 64849 | 0.66 | 0.693503 |
|
Target: 5'- -aGGCGGggucacACGCCaaccuuggcugggauUGGUUCACCaGCUACa -3' miRNA: 3'- gaCUGCC------UGCGG---------------ACCAGGUGG-CGGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home