Results 21 - 27 of 27 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13101 | 3' | -60.6 | NC_003401.1 | + | 22292 | 0.69 | 0.493002 |
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Target: 5'- ----gGGACGCUU-GUCCACCGCCu- -3' miRNA: 3'- gacugCCUGCGGAcCAGGUGGCGGug -5' |
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| 13101 | 3' | -60.6 | NC_003401.1 | + | 23592 | 0.69 | 0.474451 |
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Target: 5'- gUGAC--GCGCCUGGaCgGCUGCCACc -3' miRNA: 3'- gACUGccUGCGGACCaGgUGGCGGUG- -5' |
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| 13101 | 3' | -60.6 | NC_003401.1 | + | 8741 | 0.7 | 0.456256 |
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Target: 5'- -cGACGGcGCGUCagccGGU-CGCCGCCACa -3' miRNA: 3'- gaCUGCC-UGCGGa---CCAgGUGGCGGUG- -5' |
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| 13101 | 3' | -60.6 | NC_003401.1 | + | 125221 | 0.72 | 0.340619 |
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Target: 5'- -gGACGGGCGCCaccuggccucccUGGUCgACC-CCGCc -3' miRNA: 3'- gaCUGCCUGCGG------------ACCAGgUGGcGGUG- -5' |
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| 13101 | 3' | -60.6 | NC_003401.1 | + | 82343 | 0.73 | 0.311716 |
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Target: 5'- gUGGCGGGCGUU--GUCCGCCGCUAa -3' miRNA: 3'- gACUGCCUGCGGacCAGGUGGCGGUg -5' |
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| 13101 | 3' | -60.6 | NC_003401.1 | + | 107617 | 0.75 | 0.214805 |
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Target: 5'- -aGACGccACGCUcccgGGUCCGCCGCCACc -3' miRNA: 3'- gaCUGCc-UGCGGa---CCAGGUGGCGGUG- -5' |
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| 13101 | 3' | -60.6 | NC_003401.1 | + | 13200 | 1.09 | 0.00092 |
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Target: 5'- gCUGACGGACGCCUGGUCCACCGCCACg -3' miRNA: 3'- -GACUGCCUGCGGACCAGGUGGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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