Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13101 | 3' | -60.6 | NC_003401.1 | + | 107617 | 0.75 | 0.214805 |
Target: 5'- -aGACGccACGCUcccgGGUCCGCCGCCACc -3' miRNA: 3'- gaCUGCc-UGCGGa---CCAGGUGGCGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 119520 | 0.66 | 0.689559 |
Target: 5'- -cGuCGGACGCCggccGGUCaaaaaGCCACa -3' miRNA: 3'- gaCuGCCUGCGGa---CCAGgugg-CGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 63510 | 0.66 | 0.649803 |
Target: 5'- gUGACGcGCGCCUcuugcaggcGGcacgaaCACCGCCGCu -3' miRNA: 3'- gACUGCcUGCGGA---------CCag----GUGGCGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 118209 | 0.67 | 0.643809 |
Target: 5'- --cGCGGGCGCUgggGGUgauauguucugaugaCCGCCGCCu- -3' miRNA: 3'- gacUGCCUGCGGa--CCA---------------GGUGGCGGug -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 53188 | 0.67 | 0.639812 |
Target: 5'- uUGGCGGACGCUUccUCCGaauCCGCCcACc -3' miRNA: 3'- gACUGCCUGCGGAccAGGU---GGCGG-UG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 49745 | 0.67 | 0.599859 |
Target: 5'- -cGGCGGAUGuCCUGGU-UACCGgaCACg -3' miRNA: 3'- gaCUGCCUGC-GGACCAgGUGGCg-GUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 78081 | 0.67 | 0.599859 |
Target: 5'- cCUGcCGG-CGCCg---CCACCGCUGCa -3' miRNA: 3'- -GACuGCCuGCGGaccaGGUGGCGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 20872 | 0.67 | 0.58991 |
Target: 5'- --aACGGACGCggGGUCCuCCGCaGCu -3' miRNA: 3'- gacUGCCUGCGgaCCAGGuGGCGgUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 27091 | 0.68 | 0.570108 |
Target: 5'- -gGACGGACGCCacaacuggGGUCgCGCUuugGCCGu -3' miRNA: 3'- gaCUGCCUGCGGa-------CCAG-GUGG---CGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 132580 | 0.68 | 0.568136 |
Target: 5'- -gGGCGGcCGCCgcccggcauggcGGUCCuCCGCCGg -3' miRNA: 3'- gaCUGCCuGCGGa-----------CCAGGuGGCGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 20557 | 0.69 | 0.524308 |
Target: 5'- -cGGCGGccggucaACGCCaGGUCCauuaaaaacacaccgGCCGCCAa -3' miRNA: 3'- gaCUGCC-------UGCGGaCCAGG---------------UGGCGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 22292 | 0.69 | 0.493002 |
Target: 5'- ----gGGACGCUU-GUCCACCGCCu- -3' miRNA: 3'- gacugCCUGCGGAcCAGGUGGCGGug -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 23592 | 0.69 | 0.474451 |
Target: 5'- gUGAC--GCGCCUGGaCgGCUGCCACc -3' miRNA: 3'- gACUGccUGCGGACCaGgUGGCGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 8741 | 0.7 | 0.456256 |
Target: 5'- -cGACGGcGCGUCagccGGU-CGCCGCCACa -3' miRNA: 3'- gaCUGCC-UGCGGa---CCAgGUGGCGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 105983 | 0.68 | 0.54073 |
Target: 5'- cCUGGCcaaGGCGCUUGGgcgUgGCCGCCAa -3' miRNA: 3'- -GACUGc--CUGCGGACCa--GgUGGCGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 127121 | 0.69 | 0.521429 |
Target: 5'- -aGugGGACcCCUGGgccggCCGCUGUCAg -3' miRNA: 3'- gaCugCCUGcGGACCa----GGUGGCGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 80566 | 0.69 | 0.520471 |
Target: 5'- aUGGCuaccuGGCGCCcaccucagagcggUGGUCCGuCCGCCAUg -3' miRNA: 3'- gACUGc----CUGCGG-------------ACCAGGU-GGCGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 125221 | 0.72 | 0.340619 |
Target: 5'- -gGACGGGCGCCaccuggccucccUGGUCgACC-CCGCc -3' miRNA: 3'- gaCUGCCUGCGG------------ACCAGgUGGcGGUG- -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 82343 | 0.73 | 0.311716 |
Target: 5'- gUGGCGGGCGUU--GUCCGCCGCUAa -3' miRNA: 3'- gACUGCCUGCGGacCAGGUGGCGGUg -5' |
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13101 | 3' | -60.6 | NC_003401.1 | + | 64849 | 0.66 | 0.693503 |
Target: 5'- -aGGCGGggucacACGCCaaccuuggcugggauUGGUUCACCaGCUACa -3' miRNA: 3'- gaCUGCC------UGCGG---------------ACCAGGUGG-CGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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