miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 132675 0.71 0.656717
Target:  5'- gGGCCcgGGggGCGUCGGGgcgcggCGCCgCCGGg -3'
miRNA:   3'- aCUGG--UCuuUGCGGUCUa-----GCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 20614 0.66 0.877044
Target:  5'- cGGCCAGcccuACGCUGGcgCcucCCCCGAc -3'
miRNA:   3'- aCUGGUCuu--UGCGGUCuaGc--GGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 108629 0.67 0.824789
Target:  5'- gUGGCCAGGAGCGUacuGGAgaagaccgugccaGCUCCGAg -3'
miRNA:   3'- -ACUGGUCUUUGCGg--UCUag-----------CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 125225 0.68 0.803754
Target:  5'- -cACCGGAcgGGCGCCAccuggccucccuGGUCGaCCCCGc -3'
miRNA:   3'- acUGGUCU--UUGCGGU------------CUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 128610 0.7 0.687469
Target:  5'- -cGCCAGaAGAUGCCAGAUaaCGCCCa-- -3'
miRNA:   3'- acUGGUC-UUUGCGGUCUA--GCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 132506 0.7 0.707751
Target:  5'- aGcCCGGcgGCGCCg---CGCCCCGAc -3'
miRNA:   3'- aCuGGUCuuUGCGGucuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 63383 0.76 0.364451
Target:  5'- cGACCAGAAACGCCcgggcccucuggguuAGAaguaGCCCCGc -3'
miRNA:   3'- aCUGGUCUUUGCGG---------------UCUag--CGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 108709 0.66 0.897706
Target:  5'- aGGCCAGAAgucccGCGUCcGAagGgCCCGGg -3'
miRNA:   3'- aCUGGUCUU-----UGCGGuCUagCgGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 88700 0.66 0.897706
Target:  5'- --gUCAGAGACGCCAcccgCGCCCUu- -3'
miRNA:   3'- acuGGUCUUUGCGGUcua-GCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 132436 0.66 0.891048
Target:  5'- gGGCCGGGGcCGCCcccGGGUgcCGCUCCGc -3'
miRNA:   3'- aCUGGUCUUuGCGG---UCUA--GCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 107610 0.67 0.854387
Target:  5'- -uGCCAGaAGACGCCA---CGCuCCCGGg -3'
miRNA:   3'- acUGGUC-UUUGCGGUcuaGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 28245 0.67 0.846417
Target:  5'- gUGGCgCAGAAACGUacgugcGGUgGCCCUGGu -3'
miRNA:   3'- -ACUG-GUCUUUGCGgu----CUAgCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 98798 0.67 0.843987
Target:  5'- aUGGCCAuagucuucgcggcaGAgGACGCCAGAgaccuaGCCCCu- -3'
miRNA:   3'- -ACUGGU--------------CU-UUGCGGUCUag----CGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 14365 0.67 0.83825
Target:  5'- cGACCGcAAGC-CC--GUCGCCCCGGa -3'
miRNA:   3'- aCUGGUcUUUGcGGucUAGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 107222 0.66 0.877044
Target:  5'- cGaACCGGAcGACuCCAGGUggacCGCCCCGc -3'
miRNA:   3'- aC-UGGUCU-UUGcGGUCUA----GCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 127524 0.66 0.877044
Target:  5'- aGACaaAGAGGCG-CAGGcCGCCCCGc -3'
miRNA:   3'- aCUGg-UCUUUGCgGUCUaGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 132211 0.66 0.877044
Target:  5'- gGGcCCGGAGGCGCCcGGccggCGCCgCCGc -3'
miRNA:   3'- aCU-GGUCUUUGCGGuCUa---GCGG-GGCu -5'
13105 5' -55.9 NC_003401.1 + 120213 0.66 0.88416
Target:  5'- cGGCCAGugggaAAACGCUAGcAUCcgccugguggGCCCUGGc -3'
miRNA:   3'- aCUGGUC-----UUUGCGGUC-UAG----------CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 48232 0.66 0.88416
Target:  5'- cGcCCAGGuAAUGUgAGGggacaaguaaUCGCCCCGAc -3'
miRNA:   3'- aCuGGUCU-UUGCGgUCU----------AGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 124965 0.66 0.891048
Target:  5'- gGACUGGAAG-GCCAG--CGCCCaCGGg -3'
miRNA:   3'- aCUGGUCUUUgCGGUCuaGCGGG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.