miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 23428 0.71 0.615472
Target:  5'- cGAcCCGGAAaaauccccgccGCGCCGGGUCGUUCgGAg -3'
miRNA:   3'- aCU-GGUCUU-----------UGCGGUCUAGCGGGgCU- -5'
13105 5' -55.9 NC_003401.1 + 128610 0.7 0.687469
Target:  5'- -cGCCAGaAGAUGCCAGAUaaCGCCCa-- -3'
miRNA:   3'- acUGGUC-UUUGCGGUCUA--GCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 132506 0.7 0.707751
Target:  5'- aGcCCGGcgGCGCCg---CGCCCCGAc -3'
miRNA:   3'- aCuGGUCuuUGCGGucuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 72356 0.69 0.7178
Target:  5'- gGACUGGgcGCGCCuccuccuGAgCGCCCCGu -3'
miRNA:   3'- aCUGGUCuuUGCGGu------CUaGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 107610 0.67 0.854387
Target:  5'- -uGCCAGaAGACGCCA---CGCuCCCGGg -3'
miRNA:   3'- acUGGUC-UUUGCGGUcuaGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 28245 0.67 0.846417
Target:  5'- gUGGCgCAGAAACGUacgugcGGUgGCCCUGGu -3'
miRNA:   3'- -ACUG-GUCUUUGCGgu----CUAgCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 98798 0.67 0.843987
Target:  5'- aUGGCCAuagucuucgcggcaGAgGACGCCAGAgaccuaGCCCCu- -3'
miRNA:   3'- -ACUGGU--------------CU-UUGCGGUCUag----CGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 14365 0.67 0.83825
Target:  5'- cGACCGcAAGC-CC--GUCGCCCCGGa -3'
miRNA:   3'- aCUGGUcUUUGcGGucUAGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132668 0.68 0.803754
Target:  5'- gGGCC-GggGC-CCGGggCGCCUCGGc -3'
miRNA:   3'- aCUGGuCuuUGcGGUCuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 72219 0.68 0.785525
Target:  5'- aUGGCCGGAAuauuGgGCCucacGAUCGCCuuGu -3'
miRNA:   3'- -ACUGGUCUU----UgCGGu---CUAGCGGggCu -5'
13105 5' -55.9 NC_003401.1 + 132835 0.68 0.776196
Target:  5'- -cGCCGGGcccCGCCgAGG-CGCCCCGGg -3'
miRNA:   3'- acUGGUCUuu-GCGG-UCUaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 81051 0.68 0.776196
Target:  5'- -cACCuAGAGauuAUGCaCAGAUCGCCCUGu -3'
miRNA:   3'- acUGG-UCUU---UGCG-GUCUAGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 16772 0.69 0.747461
Target:  5'- aGGuCCAGGAugGCgCGGcAUCGCuCCUGGa -3'
miRNA:   3'- aCU-GGUCUUugCG-GUC-UAGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 28645 0.7 0.666999
Target:  5'- aUGGCCAaggcGAucGACGCCGGAUUuaUCCGAg -3'
miRNA:   3'- -ACUGGU----CU--UUGCGGUCUAGcgGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132675 0.71 0.656717
Target:  5'- gGGCCcgGGggGCGUCGGGgcgcggCGCCgCCGGg -3'
miRNA:   3'- aCUGG--UCuuUGCGGUCUa-----GCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 18549 0.71 0.615472
Target:  5'- cGACCGGGAuugugaacGCGUUaauGGAgagCGCCCCGGu -3'
miRNA:   3'- aCUGGUCUU--------UGCGG---UCUa--GCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 69196 0.74 0.447504
Target:  5'- -aACCAGGggUGCCGGGagaaGCCCCGGu -3'
miRNA:   3'- acUGGUCUuuGCGGUCUag--CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132433 0.76 0.377536
Target:  5'- gGGCCcgGGggGCGCgCGGGggacccUCGCCCCGGg -3'
miRNA:   3'- aCUGG--UCuuUGCG-GUCU------AGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 16233 0.8 0.214817
Target:  5'- -cGCCAGGGuGCGCCGGAUCGCCCUu- -3'
miRNA:   3'- acUGGUCUU-UGCGGUCUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 14221 0.66 0.904129
Target:  5'- cGcCCGGggGCGCUAGAggGUgUCGGg -3'
miRNA:   3'- aCuGGUCuuUGCGGUCUagCGgGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.