miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 52055 0.66 0.869706
Target:  5'- cGACCGuugucGGAACGCUAGAaacgUCGCUgCGu -3'
miRNA:   3'- aCUGGU-----CUUUGCGGUCU----AGCGGgGCu -5'
13105 5' -55.9 NC_003401.1 + 28245 0.67 0.846417
Target:  5'- gUGGCgCAGAAACGUacgugcGGUgGCCCUGGu -3'
miRNA:   3'- -ACUG-GUCUUUGCGgu----CUAgCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 107610 0.67 0.854387
Target:  5'- -uGCCAGaAGACGCCA---CGCuCCCGGg -3'
miRNA:   3'- acUGGUC-UUUGCGGUcuaGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 88831 0.67 0.854387
Target:  5'- cGGCCGGuuuACG-CGGAUCGaCCCUGc -3'
miRNA:   3'- aCUGGUCuu-UGCgGUCUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 30647 0.67 0.862152
Target:  5'- uUGuuUAGggGCGCUAGAgaggcgcgUUGCCUCGGa -3'
miRNA:   3'- -ACugGUCuuUGCGGUCU--------AGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 94539 0.67 0.862152
Target:  5'- cGGCCAGuccuuGGACGCCAaugcccauuGAUCGUUCCu- -3'
miRNA:   3'- aCUGGUC-----UUUGCGGU---------CUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 119232 0.66 0.868213
Target:  5'- gUGACUGGuuGCGCCugcgaccaagcuGGUCGCCCg-- -3'
miRNA:   3'- -ACUGGUCuuUGCGGu-----------CUAGCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 15676 0.66 0.869706
Target:  5'- cUGGCCaAGAuucAgGCCAGGcgCGUCCUGAc -3'
miRNA:   3'- -ACUGG-UCUu--UgCGGUCUa-GCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132295 0.66 0.869706
Target:  5'- gGGCCcgc-GCGCCGGG-CGCCgCCGGc -3'
miRNA:   3'- aCUGGucuuUGCGGUCUaGCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 98798 0.67 0.843987
Target:  5'- aUGGCCAuagucuucgcggcaGAgGACGCCAGAgaccuaGCCCCu- -3'
miRNA:   3'- -ACUGGU--------------CU-UUGCGGUCUag----CGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 14365 0.67 0.83825
Target:  5'- cGACCGcAAGC-CC--GUCGCCCCGGa -3'
miRNA:   3'- aCUGGUcUUUGcGGucUAGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132668 0.68 0.803754
Target:  5'- gGGCC-GggGC-CCGGggCGCCUCGGc -3'
miRNA:   3'- aCUGGuCuuUGcGGUCuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 125060 0.81 0.175712
Target:  5'- cGACCAGGGAgGCCAGGUgGCgCCCGu -3'
miRNA:   3'- aCUGGUCUUUgCGGUCUAgCG-GGGCu -5'
13105 5' -55.9 NC_003401.1 + 63383 0.76 0.364451
Target:  5'- cGACCAGAAACGCCcgggcccucuggguuAGAaguaGCCCCGc -3'
miRNA:   3'- aCUGGUCUUUGCGG---------------UCUag--CGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 17848 0.75 0.402906
Target:  5'- cGGCgcaCAGGGACGCgCGGAUCuCCCCGAa -3'
miRNA:   3'- aCUG---GUCUUUGCG-GUCUAGcGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 23428 0.71 0.615472
Target:  5'- cGAcCCGGAAaaauccccgccGCGCCGGGUCGUUCgGAg -3'
miRNA:   3'- aCU-GGUCUU-----------UGCGGUCUAGCGGGgCU- -5'
13105 5' -55.9 NC_003401.1 + 128610 0.7 0.687469
Target:  5'- -cGCCAGaAGAUGCCAGAUaaCGCCCa-- -3'
miRNA:   3'- acUGGUC-UUUGCGGUCUA--GCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 132506 0.7 0.707751
Target:  5'- aGcCCGGcgGCGCCg---CGCCCCGAc -3'
miRNA:   3'- aCuGGUCuuUGCGGucuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 72356 0.69 0.7178
Target:  5'- gGACUGGgcGCGCCuccuccuGAgCGCCCCGu -3'
miRNA:   3'- aCUGGUCuuUGCGGu------CUaGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 72219 0.68 0.785525
Target:  5'- aUGGCCGGAAuauuGgGCCucacGAUCGCCuuGu -3'
miRNA:   3'- -ACUGGUCUU----UgCGGu---CUAGCGGggCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.