miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 18307 1.09 0.002498
Target:  5'- gUGACCAGAAACGCCAGAUCGCCCCGAg -3'
miRNA:   3'- -ACUGGUCUUUGCGGUCUAGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 14901 0.82 0.154606
Target:  5'- cGGCCAGAGAUGCCAGGaCGgCCCUGGa -3'
miRNA:   3'- aCUGGUCUUUGCGGUCUaGC-GGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 125060 0.81 0.175712
Target:  5'- cGACCAGGGAgGCCAGGUgGCgCCCGu -3'
miRNA:   3'- aCUGGUCUUUgCGGUCUAgCG-GGGCu -5'
13105 5' -55.9 NC_003401.1 + 16233 0.8 0.214817
Target:  5'- -cGCCAGGGuGCGCCGGAUCGCCCUu- -3'
miRNA:   3'- acUGGUCUU-UGCGGUCUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 63383 0.76 0.364451
Target:  5'- cGACCAGAAACGCCcgggcccucuggguuAGAaguaGCCCCGc -3'
miRNA:   3'- aCUGGUCUUUGCGG---------------UCUag--CGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 132433 0.76 0.377536
Target:  5'- gGGCCcgGGggGCGCgCGGGggacccUCGCCCCGGg -3'
miRNA:   3'- aCUGG--UCuuUGCG-GUCU------AGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 17848 0.75 0.402906
Target:  5'- cGGCgcaCAGGGACGCgCGGAUCuCCCCGAa -3'
miRNA:   3'- aCUG---GUCUUUGCG-GUCUAGcGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 69196 0.74 0.447504
Target:  5'- -aACCAGGggUGCCGGGagaaGCCCCGGu -3'
miRNA:   3'- acUGGUCUuuGCGGUCUag--CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 23428 0.71 0.615472
Target:  5'- cGAcCCGGAAaaauccccgccGCGCCGGGUCGUUCgGAg -3'
miRNA:   3'- aCU-GGUCUU-----------UGCGGUCUAGCGGGgCU- -5'
13105 5' -55.9 NC_003401.1 + 18549 0.71 0.615472
Target:  5'- cGACCGGGAuugugaacGCGUUaauGGAgagCGCCCCGGu -3'
miRNA:   3'- aCUGGUCUU--------UGCGG---UCUa--GCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132675 0.71 0.656717
Target:  5'- gGGCCcgGGggGCGUCGGGgcgcggCGCCgCCGGg -3'
miRNA:   3'- aCUGG--UCuuUGCGGUCUa-----GCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 28645 0.7 0.666999
Target:  5'- aUGGCCAaggcGAucGACGCCGGAUUuaUCCGAg -3'
miRNA:   3'- -ACUGGU----CU--UUGCGGUCUAGcgGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 128610 0.7 0.687469
Target:  5'- -cGCCAGaAGAUGCCAGAUaaCGCCCa-- -3'
miRNA:   3'- acUGGUC-UUUGCGGUCUA--GCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 132506 0.7 0.707751
Target:  5'- aGcCCGGcgGCGCCg---CGCCCCGAc -3'
miRNA:   3'- aCuGGUCuuUGCGGucuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 72356 0.69 0.7178
Target:  5'- gGACUGGgcGCGCCuccuccuGAgCGCCCCGu -3'
miRNA:   3'- aCUGGUCuuUGCGGu------CUaGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 16772 0.69 0.747461
Target:  5'- aGGuCCAGGAugGCgCGGcAUCGCuCCUGGa -3'
miRNA:   3'- aCU-GGUCUUugCG-GUC-UAGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 81051 0.68 0.776196
Target:  5'- -cACCuAGAGauuAUGCaCAGAUCGCCCUGu -3'
miRNA:   3'- acUGG-UCUU---UGCG-GUCUAGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 132835 0.68 0.776196
Target:  5'- -cGCCGGGcccCGCCgAGG-CGCCCCGGg -3'
miRNA:   3'- acUGGUCUuu-GCGG-UCUaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 72219 0.68 0.785525
Target:  5'- aUGGCCGGAAuauuGgGCCucacGAUCGCCuuGu -3'
miRNA:   3'- -ACUGGUCUU----UgCGGu---CUAGCGGggCu -5'
13105 5' -55.9 NC_003401.1 + 128157 0.68 0.794714
Target:  5'- cUGcCCGGggGCGaaauCAGAUCGgCCCUGu -3'
miRNA:   3'- -ACuGGUCuuUGCg---GUCUAGC-GGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.