miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 13259 0.66 0.891048
Target:  5'- gUGACCgGGggGCGCgaguagCAGAUC-CCCgGGg -3'
miRNA:   3'- -ACUGG-UCuuUGCG------GUCUAGcGGGgCU- -5'
13105 5' -55.9 NC_003401.1 + 14221 0.66 0.904129
Target:  5'- cGcCCGGggGCGCUAGAggGUgUCGGg -3'
miRNA:   3'- aCuGGUCuuUGCGGUCUagCGgGGCU- -5'
13105 5' -55.9 NC_003401.1 + 14365 0.67 0.83825
Target:  5'- cGACCGcAAGC-CC--GUCGCCCCGGa -3'
miRNA:   3'- aCUGGUcUUUGcGGucUAGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 14901 0.82 0.154606
Target:  5'- cGGCCAGAGAUGCCAGGaCGgCCCUGGa -3'
miRNA:   3'- aCUGGUCUUUGCGGUCUaGC-GGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 15676 0.66 0.869706
Target:  5'- cUGGCCaAGAuucAgGCCAGGcgCGUCCUGAc -3'
miRNA:   3'- -ACUGG-UCUu--UgCGGUCUa-GCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 16233 0.8 0.214817
Target:  5'- -cGCCAGGGuGCGCCGGAUCGCCCUu- -3'
miRNA:   3'- acUGGUCUU-UGCGGUCUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 16772 0.69 0.747461
Target:  5'- aGGuCCAGGAugGCgCGGcAUCGCuCCUGGa -3'
miRNA:   3'- aCU-GGUCUUugCG-GUC-UAGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 17848 0.75 0.402906
Target:  5'- cGGCgcaCAGGGACGCgCGGAUCuCCCCGAa -3'
miRNA:   3'- aCUG---GUCUUUGCG-GUCUAGcGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 18307 1.09 0.002498
Target:  5'- gUGACCAGAAACGCCAGAUCGCCCCGAg -3'
miRNA:   3'- -ACUGGUCUUUGCGGUCUAGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 18549 0.71 0.615472
Target:  5'- cGACCGGGAuugugaacGCGUUaauGGAgagCGCCCCGGu -3'
miRNA:   3'- aCUGGUCUU--------UGCGG---UCUa--GCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 20614 0.66 0.877044
Target:  5'- cGGCCAGcccuACGCUGGcgCcucCCCCGAc -3'
miRNA:   3'- aCUGGUCuu--UGCGGUCuaGc--GGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 21991 0.68 0.794714
Target:  5'- -aGCCGGGccGCGCCuguGGUCGgCCCCGc -3'
miRNA:   3'- acUGGUCUu-UGCGGu--CUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 23428 0.71 0.615472
Target:  5'- cGAcCCGGAAaaauccccgccGCGCCGGGUCGUUCgGAg -3'
miRNA:   3'- aCU-GGUCUU-----------UGCGGUCUAGCGGGgCU- -5'
13105 5' -55.9 NC_003401.1 + 28245 0.67 0.846417
Target:  5'- gUGGCgCAGAAACGUacgugcGGUgGCCCUGGu -3'
miRNA:   3'- -ACUG-GUCUUUGCGgu----CUAgCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 28645 0.7 0.666999
Target:  5'- aUGGCCAaggcGAucGACGCCGGAUUuaUCCGAg -3'
miRNA:   3'- -ACUGGU----CU--UUGCGGUCUAGcgGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 30535 0.67 0.846417
Target:  5'- cUGGCCcaaaucacAC-CCAGAUCGCCCCa- -3'
miRNA:   3'- -ACUGGucuu----UGcGGUCUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 30647 0.67 0.862152
Target:  5'- uUGuuUAGggGCGCUAGAgaggcgcgUUGCCUCGGa -3'
miRNA:   3'- -ACugGUCuuUGCGGUCU--------AGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 48232 0.66 0.88416
Target:  5'- cGcCCAGGuAAUGUgAGGggacaaguaaUCGCCCCGAc -3'
miRNA:   3'- aCuGGUCU-UUGCGgUCU----------AGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 52055 0.66 0.869706
Target:  5'- cGACCGuugucGGAACGCUAGAaacgUCGCUgCGu -3'
miRNA:   3'- aCUGGU-----CUUUGCGGUCU----AGCGGgGCu -5'
13105 5' -55.9 NC_003401.1 + 52199 0.67 0.83825
Target:  5'- cGACaaCGGu--CGCCAGAUCGUCCUu- -3'
miRNA:   3'- aCUG--GUCuuuGCGGUCUAGCGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.