miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 132835 0.68 0.776196
Target:  5'- -cGCCGGGcccCGCCgAGG-CGCCCCGGg -3'
miRNA:   3'- acUGGUCUuu-GCGG-UCUaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132675 0.71 0.656717
Target:  5'- gGGCCcgGGggGCGUCGGGgcgcggCGCCgCCGGg -3'
miRNA:   3'- aCUGG--UCuuUGCGGUCUa-----GCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 132668 0.68 0.803754
Target:  5'- gGGCC-GggGC-CCGGggCGCCUCGGc -3'
miRNA:   3'- aCUGGuCuuUGcGGUCuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132514 0.66 0.869706
Target:  5'- cGGCCGGggGCGgCGGc-CGCgggCCCGGg -3'
miRNA:   3'- aCUGGUCuuUGCgGUCuaGCG---GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132506 0.7 0.707751
Target:  5'- aGcCCGGcgGCGCCg---CGCCCCGAc -3'
miRNA:   3'- aCuGGUCuuUGCGGucuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132472 0.67 0.862152
Target:  5'- gGGCCGGGAGCcgggggagGCCGGcggCGCCCgGc -3'
miRNA:   3'- aCUGGUCUUUG--------CGGUCua-GCGGGgCu -5'
13105 5' -55.9 NC_003401.1 + 132436 0.66 0.891048
Target:  5'- gGGCCGGGGcCGCCcccGGGUgcCGCUCCGc -3'
miRNA:   3'- aCUGGUCUUuGCGG---UCUA--GCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 132433 0.76 0.377536
Target:  5'- gGGCCcgGGggGCGCgCGGGggacccUCGCCCCGGg -3'
miRNA:   3'- aCUGG--UCuuUGCG-GUCU------AGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 132381 0.66 0.897706
Target:  5'- cGGCCcggcGGcgGCGCCGGccgggCGCCuCCGGg -3'
miRNA:   3'- aCUGG----UCuuUGCGGUCua---GCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 132295 0.66 0.869706
Target:  5'- gGGCCcgc-GCGCCGGG-CGCCgCCGGc -3'
miRNA:   3'- aCUGGucuuUGCGGUCUaGCGG-GGCU- -5'
13105 5' -55.9 NC_003401.1 + 132211 0.66 0.877044
Target:  5'- gGGcCCGGAGGCGCCcGGccggCGCCgCCGc -3'
miRNA:   3'- aCU-GGUCUUUGCGGuCUa---GCGG-GGCu -5'
13105 5' -55.9 NC_003401.1 + 128610 0.7 0.687469
Target:  5'- -cGCCAGaAGAUGCCAGAUaaCGCCCa-- -3'
miRNA:   3'- acUGGUC-UUUGCGGUCUA--GCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 128157 0.68 0.794714
Target:  5'- cUGcCCGGggGCGaaauCAGAUCGgCCCUGu -3'
miRNA:   3'- -ACuGGUCuuUGCg---GUCUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 127524 0.66 0.877044
Target:  5'- aGACaaAGAGGCG-CAGGcCGCCCCGc -3'
miRNA:   3'- aCUGg-UCUUUGCgGUCUaGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 125225 0.68 0.803754
Target:  5'- -cACCGGAcgGGCGCCAccuggccucccuGGUCGaCCCCGc -3'
miRNA:   3'- acUGGUCU--UUGCGGU------------CUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 125060 0.81 0.175712
Target:  5'- cGACCAGGGAgGCCAGGUgGCgCCCGu -3'
miRNA:   3'- aCUGGUCUUUgCGGUCUAgCG-GGGCu -5'
13105 5' -55.9 NC_003401.1 + 124965 0.66 0.891048
Target:  5'- gGACUGGAAG-GCCAG--CGCCCaCGGg -3'
miRNA:   3'- aCUGGUCUUUgCGGUCuaGCGGG-GCU- -5'
13105 5' -55.9 NC_003401.1 + 120213 0.66 0.88416
Target:  5'- cGGCCAGugggaAAACGCUAGcAUCcgccugguggGCCCUGGc -3'
miRNA:   3'- aCUGGUC-----UUUGCGGUC-UAG----------CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 119232 0.66 0.868213
Target:  5'- gUGACUGGuuGCGCCugcgaccaagcuGGUCGCCCg-- -3'
miRNA:   3'- -ACUGGUCuuUGCGGu-----------CUAGCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 108709 0.66 0.897706
Target:  5'- aGGCCAGAAgucccGCGUCcGAagGgCCCGGg -3'
miRNA:   3'- aCUGGUCUU-----UGCGGuCUagCgGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.