miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 63383 0.76 0.364451
Target:  5'- cGACCAGAAACGCCcgggcccucuggguuAGAaguaGCCCCGc -3'
miRNA:   3'- aCUGGUCUUUGCGG---------------UCUag--CGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 69196 0.74 0.447504
Target:  5'- -aACCAGGggUGCCGGGagaaGCCCCGGu -3'
miRNA:   3'- acUGGUCUuuGCGGUCUag--CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 72219 0.68 0.785525
Target:  5'- aUGGCCGGAAuauuGgGCCucacGAUCGCCuuGu -3'
miRNA:   3'- -ACUGGUCUU----UgCGGu---CUAGCGGggCu -5'
13105 5' -55.9 NC_003401.1 + 72356 0.69 0.7178
Target:  5'- gGACUGGgcGCGCCuccuccuGAgCGCCCCGu -3'
miRNA:   3'- aCUGGUCuuUGCGGu------CUaGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 81051 0.68 0.776196
Target:  5'- -cACCuAGAGauuAUGCaCAGAUCGCCCUGu -3'
miRNA:   3'- acUGG-UCUU---UGCG-GUCUAGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 84213 0.67 0.862152
Target:  5'- -aGCCGGGAAUGCCGcugccCGCCCCc- -3'
miRNA:   3'- acUGGUCUUUGCGGUcua--GCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 88700 0.66 0.897706
Target:  5'- --gUCAGAGACGCCAcccgCGCCCUu- -3'
miRNA:   3'- acuGGUCUUUGCGGUcua-GCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 88831 0.67 0.854387
Target:  5'- cGGCCGGuuuACG-CGGAUCGaCCCUGc -3'
miRNA:   3'- aCUGGUCuu-UGCgGUCUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 94539 0.67 0.862152
Target:  5'- cGGCCAGuccuuGGACGCCAaugcccauuGAUCGUUCCu- -3'
miRNA:   3'- aCUGGUC-----UUUGCGGU---------CUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 98798 0.67 0.843987
Target:  5'- aUGGCCAuagucuucgcggcaGAgGACGCCAGAgaccuaGCCCCu- -3'
miRNA:   3'- -ACUGGU--------------CU-UUGCGGUCUag----CGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 104842 0.66 0.877044
Target:  5'- cUGGCCAccGAGuccauCGCCGGG-CGCgCCGGa -3'
miRNA:   3'- -ACUGGU--CUUu----GCGGUCUaGCGgGGCU- -5'
13105 5' -55.9 NC_003401.1 + 107222 0.66 0.877044
Target:  5'- cGaACCGGAcGACuCCAGGUggacCGCCCCGc -3'
miRNA:   3'- aC-UGGUCU-UUGcGGUCUA----GCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 107610 0.67 0.854387
Target:  5'- -uGCCAGaAGACGCCA---CGCuCCCGGg -3'
miRNA:   3'- acUGGUC-UUUGCGGUcuaGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 108629 0.67 0.824789
Target:  5'- gUGGCCAGGAGCGUacuGGAgaagaccgugccaGCUCCGAg -3'
miRNA:   3'- -ACUGGUCUUUGCGg--UCUag-----------CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 108709 0.66 0.897706
Target:  5'- aGGCCAGAAgucccGCGUCcGAagGgCCCGGg -3'
miRNA:   3'- aCUGGUCUU-----UGCGGuCUagCgGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 119232 0.66 0.868213
Target:  5'- gUGACUGGuuGCGCCugcgaccaagcuGGUCGCCCg-- -3'
miRNA:   3'- -ACUGGUCuuUGCGGu-----------CUAGCGGGgcu -5'
13105 5' -55.9 NC_003401.1 + 120213 0.66 0.88416
Target:  5'- cGGCCAGugggaAAACGCUAGcAUCcgccugguggGCCCUGGc -3'
miRNA:   3'- aCUGGUC-----UUUGCGGUC-UAG----------CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 124965 0.66 0.891048
Target:  5'- gGACUGGAAG-GCCAG--CGCCCaCGGg -3'
miRNA:   3'- aCUGGUCUUUgCGGUCuaGCGGG-GCU- -5'
13105 5' -55.9 NC_003401.1 + 125060 0.81 0.175712
Target:  5'- cGACCAGGGAgGCCAGGUgGCgCCCGu -3'
miRNA:   3'- aCUGGUCUUUgCGGUCUAgCG-GGGCu -5'
13105 5' -55.9 NC_003401.1 + 125225 0.68 0.803754
Target:  5'- -cACCGGAcgGGCGCCAccuggccucccuGGUCGaCCCCGc -3'
miRNA:   3'- acUGGUCU--UUGCGGU------------CUAGC-GGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.