miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 5' -55.9 NC_003401.1 + 84213 0.67 0.862152
Target:  5'- -aGCCGGGAAUGCCGcugccCGCCCCc- -3'
miRNA:   3'- acUGGUCUUUGCGGUcua--GCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 94539 0.67 0.862152
Target:  5'- cGGCCAGuccuuGGACGCCAaugcccauuGAUCGUUCCu- -3'
miRNA:   3'- aCUGGUC-----UUUGCGGU---------CUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 132472 0.67 0.862152
Target:  5'- gGGCCGGGAGCcgggggagGCCGGcggCGCCCgGc -3'
miRNA:   3'- aCUGGUCUUUG--------CGGUCua-GCGGGgCu -5'
13105 5' -55.9 NC_003401.1 + 107610 0.67 0.854387
Target:  5'- -uGCCAGaAGACGCCA---CGCuCCCGGg -3'
miRNA:   3'- acUGGUC-UUUGCGGUcuaGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 88831 0.67 0.854387
Target:  5'- cGGCCGGuuuACG-CGGAUCGaCCCUGc -3'
miRNA:   3'- aCUGGUCuu-UGCgGUCUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 30535 0.67 0.846417
Target:  5'- cUGGCCcaaaucacAC-CCAGAUCGCCCCa- -3'
miRNA:   3'- -ACUGGucuu----UGcGGUCUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 28245 0.67 0.846417
Target:  5'- gUGGCgCAGAAACGUacgugcGGUgGCCCUGGu -3'
miRNA:   3'- -ACUG-GUCUUUGCGgu----CUAgCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 98798 0.67 0.843987
Target:  5'- aUGGCCAuagucuucgcggcaGAgGACGCCAGAgaccuaGCCCCu- -3'
miRNA:   3'- -ACUGGU--------------CU-UUGCGGUCUag----CGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 52199 0.67 0.83825
Target:  5'- cGACaaCGGu--CGCCAGAUCGUCCUu- -3'
miRNA:   3'- aCUG--GUCuuuGCGGUCUAGCGGGGcu -5'
13105 5' -55.9 NC_003401.1 + 14365 0.67 0.83825
Target:  5'- cGACCGcAAGC-CC--GUCGCCCCGGa -3'
miRNA:   3'- aCUGGUcUUUGcGGucUAGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 108629 0.67 0.824789
Target:  5'- gUGGCCAGGAGCGUacuGGAgaagaccgugccaGCUCCGAg -3'
miRNA:   3'- -ACUGGUCUUUGCGg--UCUag-----------CGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 125225 0.68 0.803754
Target:  5'- -cACCGGAcgGGCGCCAccuggccucccuGGUCGaCCCCGc -3'
miRNA:   3'- acUGGUCU--UUGCGGU------------CUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 132668 0.68 0.803754
Target:  5'- gGGCC-GggGC-CCGGggCGCCUCGGc -3'
miRNA:   3'- aCUGGuCuuUGcGGUCuaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 21991 0.68 0.794714
Target:  5'- -aGCCGGGccGCGCCuguGGUCGgCCCCGc -3'
miRNA:   3'- acUGGUCUu-UGCGGu--CUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 128157 0.68 0.794714
Target:  5'- cUGcCCGGggGCGaaauCAGAUCGgCCCUGu -3'
miRNA:   3'- -ACuGGUCuuUGCg---GUCUAGC-GGGGCu -5'
13105 5' -55.9 NC_003401.1 + 72219 0.68 0.785525
Target:  5'- aUGGCCGGAAuauuGgGCCucacGAUCGCCuuGu -3'
miRNA:   3'- -ACUGGUCUU----UgCGGu---CUAGCGGggCu -5'
13105 5' -55.9 NC_003401.1 + 81051 0.68 0.776196
Target:  5'- -cACCuAGAGauuAUGCaCAGAUCGCCCUGu -3'
miRNA:   3'- acUGG-UCUU---UGCG-GUCUAGCGGGGCu -5'
13105 5' -55.9 NC_003401.1 + 132835 0.68 0.776196
Target:  5'- -cGCCGGGcccCGCCgAGG-CGCCCCGGg -3'
miRNA:   3'- acUGGUCUuu-GCGG-UCUaGCGGGGCU- -5'
13105 5' -55.9 NC_003401.1 + 16772 0.69 0.747461
Target:  5'- aGGuCCAGGAugGCgCGGcAUCGCuCCUGGa -3'
miRNA:   3'- aCU-GGUCUUugCG-GUC-UAGCG-GGGCU- -5'
13105 5' -55.9 NC_003401.1 + 72356 0.69 0.7178
Target:  5'- gGACUGGgcGCGCCuccuccuGAgCGCCCCGu -3'
miRNA:   3'- aCUGGUCuuUGCGGu------CUaGCGGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.